Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_E02
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    30   1.7  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    30   1.7  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   3.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   3.0  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical p...    28   7.0  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    28   7.0  
AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal gro...    28   7.0  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   9.2  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    28   9.2  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    28   9.2  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = -3

Query: 621 GGXPPPP--FXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           GG PPPP  F              PPPP      PPPP
Sbjct: 81  GGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 612 PPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           PPPP          +    PPPP  +   PPPP
Sbjct: 772 PPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPP 804


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 612 PPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           PPPP          +    PPPP  +   PPPP
Sbjct: 772 PPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPP 804


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 627 FXGGXPPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           F GG PPP                PPPP   +  PPPP
Sbjct: 73  FMGG-PPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPP 109


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 612 PPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           PPPP               PPPP  L   PPPP
Sbjct: 70  PPPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 627 FXGGXPPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           F  G PPPPF              PPP   +   PPPP
Sbjct: 751 FNAGAPPPPFGRGAGPMSS---FPPPPRGGMHHMPPPP 785


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 612 PPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           PPPP               PPPP  L   PPPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593


>Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24e protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 612 PPPPFXXXXXXXX--KKXXXXPPPPXXLFXXPPPP 514
           PPPP           ++    PPPP  +   PPPP
Sbjct: 447 PPPPLVSDAGVQVEIRREHVAPPPPPVVIPPPPPP 481


>Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24d protein.
          Length = 845

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 612 PPPPFXXXXXXXX--KKXXXXPPPPXXLFXXPPPP 514
           PPPP           ++    PPPP  +   PPPP
Sbjct: 627 PPPPLVSDAGVQVEIRREHVAPPPPPVVIPPPPPP 661


>Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24a protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 612 PPPPFXXXXXXXX--KKXXXXPPPPXXLFXXPPPP 514
           PPPP           ++    PPPP  +   PPPP
Sbjct: 644 PPPPLVSDAGVQVEIRREHVAPPPPPVVIPPPPPP 678


>Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24g protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 612 PPPPFXXXXXXXX--KKXXXXPPPPXXLFXXPPPP 514
           PPPP           ++    PPPP  +   PPPP
Sbjct: 699 PPPPLVSDAGVQVEIRREHVAPPPPPVVIPPPPPP 733


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 479 KKKKXXXXXXXXGGGGXXNKXXGGGGXXXFFXXXXXXXXXXGGGG 613
           KK++         GGG  N+  GGGG   F           GGGG
Sbjct: 115 KKEQDNYGGGGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGGG 159


>AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant A
           protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 612 PPPPFXXXXXXXX--KKXXXXPPPPXXLFXXPPPP 514
           PPPP           ++    PPPP  +   PPPP
Sbjct: 699 PPPPLVSDAGVQVEIRREHVAPPPPPVVIPPPPPP 733


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 612 PPPPFXXXXXXXXKKXXXXPPPPXXLFXXPPPP 514
           PPPP               PPPP      PPPP
Sbjct: 46  PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 518 GGGXXNKXXGGGGXXXFFXXXXXXXXXXGGGG 613
           GGG  N+  GGGG   F           GGGG
Sbjct: 82  GGGGGNQGGGGGGGFNFNDIGGLINSMGGGGG 113


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 518 GGGXXNKXXGGGGXXXFFXXXXXXXXXXGGGG 613
           GGG  N+  GGGG   F           GGGG
Sbjct: 107 GGGGGNQGGGGGGGFNFNDIGGLINSMGGGGG 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,723
Number of Sequences: 27780
Number of extensions: 212552
Number of successful extensions: 779
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)