Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D22
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 738 KIWRMQIYFSV*RWR 782
           +IWR +++ +V RWR
Sbjct: 73  EIWRNKLFVTVPRWR 87


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 711 QFILLKDYSKIWRMQIYFS 767
           +++ L D S++W   ++FS
Sbjct: 105 KYLTLTDASRVWMPDLFFS 123


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 711 QFILLKDYSKIWRMQIYFS 767
           +++ L D S++W   ++FS
Sbjct: 105 KYLTLTDASRVWMPDLFFS 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,492
Number of Sequences: 438
Number of extensions: 5669
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)