Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D20
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 607 VHNVFYSRREFARPRSPXQT 666
           V+N    +R ++RPR P QT
Sbjct: 158 VYNNIKRKRSWSRPREPAQT 177


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 375 IFGR-RKPYFDQFFYPFEKLIITFTI*YYLRFSHCDVNILIFYVTLLLIF 229
           IF R R  YF   F P   L+ +  I ++L ++     ++I   T+L  F
Sbjct: 295 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFF 344


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 375 IFGR-RKPYFDQFFYPFEKLIITFTI*YYLRFSHCDVNILIFYVTLLLIF 229
           IF R R  YF   F P   L+ +  I ++L ++     ++I   T+L  F
Sbjct: 264 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFF 313


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 375 IFGR-RKPYFDQFFYPFEKLIITFTI*YYLRFSHCDVNILIFYVTLLLIF 229
           IF R R  YF   F P   L+ +  I ++L ++     ++I   T+L  F
Sbjct: 315 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFF 364


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 375 IFGR-RKPYFDQFFYPFEKLIITFTI*YYLRFSHCDVNILIFYVTLLLIF 229
           IF R R  YF   F P   L+ +  I ++L ++     ++I   T+L  F
Sbjct: 264 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFF 313


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +2

Query: 428  FVARSSLLRRVSKSTLTYLVRAACSFHEDAGY*RHAGPPPRYGASALCWLSHRTWRAIR 604
            F  R++L   +   T   ++  A + + +    R   P  R  A+ L W   R W  +R
Sbjct: 1143 FEFRAALHEALRGRTAQLIIVQAENAYPEVELDRELRPYLRTAAAILTWNEKRFWERLR 1201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,887
Number of Sequences: 438
Number of extensions: 4965
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)