Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D18
         (978 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.19 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.33 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 872 PPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPP 967
           PPP    GGPPPP   P            PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.25
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 869 PPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPP 967
           PPPPP      P P   P   P P      PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 30.7 bits (66), Expect = 0.33
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 869 PPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPP 964
           PPP P   G PPPP      G  P      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.57
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = +2

Query: 866 GPPPPPXXXG----GPPPPRXTP 922
           GPPPPP   G    GPPPP   P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 872 PPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPP 967
           PPPP      P P   P   P P      PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
 Frame = +2

Query: 641 PXQXLSPNPAX-SIXXPDPPXGEKXXXXXXXXXXXXXXPSRKPFXKRXKAXPLKXNPGRV 817
           P   +S NPA  S   P  P                  P   P  +R +  P   N    
Sbjct: 274 PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSN 333

Query: 818 GXSXQKXPXLXSTXXXGPPPPPXXXGGPPPP--RXTPXXGPQP 940
                  P   S      P PP     PPPP  R  P  G QP
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +2

Query: 839 PXLXSTXXXGPPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPP 964
           P L       PP PP     PP P   P   P P      PP
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
 Frame = +2

Query: 662 NPAXSIXXPDPPXGEKXXXXXXXXXXXXXXPSRKPFXK-RXKAXPLKXNPGRVGXSXQKX 838
           N A SI  P PP G                    P    R  + P    P   G S    
Sbjct: 346 NAAGSI--PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403

Query: 839 PXLXSTXXXGPPPPPXXXGGPP--PPRXTPXXGPQ-PXXXXXXPP 964
           P L +      PP P     PP  PP   P   P  P      PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 869  PPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPP 967
            P PPP     PPPP       P P      PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAP----PMPAGPPSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 866  GPPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPP 964
            G PP P   G PP P+ +    P P      PP
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 872  PPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPPR 970
            PP P   G PP P+ +    P P      P P+
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 872  PPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPPR 970
            PP P   G PP P+ +    P P      P P+
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 872  PPPPXXXGGPPPPRXTPXXGPQPXXXXXXPP 964
            PP P   G PP P+ +    P P      PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/44 (27%), Positives = 15/44 (34%)
 Frame = +2

Query: 839  PXLXSTXXXGPPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPPR 970
            P +       PP P    G PP P+      P P      P P+
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 785 AXPLKXNPGRVGXSXQKXPXLXSTXXXGPPPPPXXXGGPPPP 910
           A PLK     +  S  + P    +   G PPPP     PPPP
Sbjct: 277 AVPLKTALANLSASKTQAPSSGDSANGGLPPPPP----PPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 845 LXSTXXXGPPPPPXXXGGPPPPRXTPXXGP 934
           + S     PPPPP   G  PP +  P   P
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +2

Query: 866 GPPPPPXXXGGPPPPRXTPXXGPQPXXXXXXPPPRG 973
           G PPPP     PPPP   P   P P      PPP G
Sbjct: 7   GNPPPP-----PPPPGFEPPSQPPP------PPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -3

Query: 967 GXGVXXXXXGLGAXXGGXPGGGGXPXXXRG-GW 872
           G G      GLG   GG  G GG P    G GW
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,390
Number of Sequences: 5004
Number of extensions: 19808
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)