Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D16
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    62   8e-11
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   1.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +2

Query: 125 NATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECA 298
           N  K+T +  T  K      L + +RRYDRKQ G+GGQ+KP+F         +VLRLEC 
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECV 75

Query: 299 DCKVRSQVCIE 331
            CK ++Q+ ++
Sbjct: 76  SCKYKNQLVLK 86



 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +3

Query: 240 PSSKRRQKPLRKLCSVLSVQIAR*DHRFALKRCKHFELGGDKKRKGQMIQF 392
           P   ++ K  +K+   L     +  ++  LKRCKHFELGG+KK KG  IQF
Sbjct: 56  PVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 79  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 189
           MVN+PK R+TY              +QYKK  +   AQG
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQG 39


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 188 PWAACLSLDFLYCDTLCTLWHL 123
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,562
Number of Sequences: 5004
Number of extensions: 30677
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)