Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_D16
(927 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal... 58 6e-08
CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein. 58 6e-08
BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein L36a-... 58 6e-08
BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein L36a-... 58 6e-08
BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein L36a-... 58 6e-08
BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein L36a-... 58 6e-08
AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein L36a-... 58 6e-08
U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protei... 56 1e-07
CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein. 56 1e-07
BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a ... 56 1e-07
BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a ... 56 1e-07
BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a ... 56 1e-07
BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a ... 56 1e-07
AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting ... 56 1e-07
AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing prot... 56 1e-07
AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a ... 56 1e-07
BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein. 44 8e-04
U16997-1|AAA64751.1| 560|Homo sapiens ROR gamma protein. 32 3.4
CR457436-1|CAG33717.1| 518|Homo sapiens RORC protein. 32 3.4
BC110571-1|AAI10572.1| 518|Homo sapiens RAR-related orphan rece... 32 3.4
BC031554-1|AAH31554.1| 518|Homo sapiens RAR-related orphan rece... 32 3.4
AL589765-18|CAI17180.1| 518|Homo sapiens RAR-related orphan rec... 32 3.4
AL589765-17|CAI17179.1| 497|Homo sapiens RAR-related orphan rec... 32 3.4
AK223137-1|BAD96857.1| 518|Homo sapiens RAR-related orphan rece... 31 4.5
>M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal
protein mRNA, complete cds. ).
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 57.6 bits (133), Expect = 6e-08
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + RRRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protein
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting
protein 15 protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing protein
6 protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 56.4 bits (130), Expect = 1e-07
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 134 KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVR 313
K T+Y K + + +RRYDRKQ GYGGQ+KPIF IVLRLEC + R
Sbjct: 22 KVTQY---KKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCR 78
Query: 314 SQ 319
S+
Sbjct: 79 SK 80
Score = 51.6 bits (118), Expect = 4e-06
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 324 ALKRCKHFELGGDKKRKGQMIQF 392
A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 84 AIKRCKHFELGGDKKRKGQVIQF 106
Score = 34.3 bits (75), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQG 189
MVNVPK RRT+ +QYKK K+ AQG
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG 37
>BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein.
Length = 25
Score = 44.0 bits (99), Expect = 8e-04
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 327 LKRCKHFELGGDKKRKGQMIQF 392
+KR KHF+LGGDKKRKGQ+IQF
Sbjct: 4 IKRYKHFKLGGDKKRKGQVIQF 25
>U16997-1|AAA64751.1| 560|Homo sapiens ROR gamma protein.
Length = 560
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
>CR457436-1|CAG33717.1| 518|Homo sapiens RORC protein.
Length = 518
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
>BC110571-1|AAI10572.1| 518|Homo sapiens RAR-related orphan
receptor C protein.
Length = 518
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
>BC031554-1|AAH31554.1| 518|Homo sapiens RAR-related orphan
receptor C protein.
Length = 518
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
>AL589765-18|CAI17180.1| 518|Homo sapiens RAR-related orphan
receptor C protein.
Length = 518
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
>AL589765-17|CAI17179.1| 497|Homo sapiens RAR-related orphan
receptor C protein.
Length = 497
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY +F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 229 SYGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 279
>AK223137-1|BAD96857.1| 518|Homo sapiens RAR-related orphan
receptor C isoform a variant protein.
Length = 518
Score = 31.5 bits (68), Expect = 4.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 414 SYLLEAFKIGSSVPFSSC---HHRAQSACISSMQTCDLTLQSAHSRRSTIF 271
SY F+ P++S H QS C S +TC L L+ +RS IF
Sbjct: 250 SYGSPGFRSTPEAPYASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF 300
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,653,288
Number of Sequences: 237096
Number of extensions: 1205357
Number of successful extensions: 2231
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2231
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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