Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D16
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    64   1e-10
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 33/76 (43%), Positives = 46/76 (60%)
 Frame = +2

Query: 104 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 283
           G+  K+ N  K T+Y   K  ++    + RRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 284 RLECADCKVRSQVCIE 331
           R+EC +CK + Q+ I+
Sbjct: 70  RMECTECKHKKQLPIK 85



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +3

Query: 240 PSSKRRQKPLRKLCSVLSVQIAR*DHRFALKRCKHFELGGDKKRKGQMIQF 392
           P  +++ K  +K+   +     +   +  +KRCKHFELGG KK +GQ+IQF
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 79  MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 189
           MVNVPK RRT+             +QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 33/76 (43%), Positives = 46/76 (60%)
 Frame = +2

Query: 104 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 283
           G+  K+ N  K T+Y   K  ++    + RRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 284 RLECADCKVRSQVCIE 331
           R+EC +CK + Q+ I+
Sbjct: 70  RMECTECKHKKQLPIK 85



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +3

Query: 240 PSSKRRQKPLRKLCSVLSVQIAR*DHRFALKRCKHFELGGDKKRKGQMIQF 392
           P  +++ K  +K+   +     +   +  +KRCKHFELGG KK +GQ+IQF
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 79  MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 189
           MVNVPK RRT+             +QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 212 VYDHNVFXPWA-ACLSLDFLYCDTLCTLWHL 123
           +YDH+ +  W    +S+ F++C   C +W +
Sbjct: 27  IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57


>Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical
           protein C45B11.5 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -3

Query: 160 FCTVIPCVLCGIYIFCSTSCAVLVRSPFLSS----FGNDIKPKS*GIP 29
           FC V+  +  GI++ C   C   +R     S    F N+ KP    +P
Sbjct: 25  FCLVVTFITIGIFLLCGAWCIYAIRKMQEESSVYHFENEFKPDDDSVP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,179
Number of Sequences: 27780
Number of extensions: 185993
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)