Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D13
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    29   3.6  
01_02_0090 + 11012325-11012463,11012543-11012797,11013001-110130...    29   3.6  
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365...    29   6.4  
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    28   8.4  

>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 383 KHAVAXPDGTAASEECNDESDAPNNHTGHRRYSEA 279
           +HA A P   A +   +D+ D+P    GHRR   A
Sbjct: 355 RHAAAPPPPVALAVSPDDDDDSPARSGGHRRSRSA 389


>01_02_0090 +
           11012325-11012463,11012543-11012797,11013001-11013081,
           11013164-11013234,11013400-11013432,11015658-11016047
          Length = 322

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 72  VGPHVDLQIYYHLHISAQLNNKMGCGEFLVKY 167
           V  +VDL + Y  HI+ ++ N+ G  ++L KY
Sbjct: 206 VAHNVDLLVKYQAHINVEIVNRDGMEKYLFKY 237


>05_06_0126 -
           25834129-25834214,25834595-25834658,25836201-25836521,
           25836912-25837040,25837118-25837177,25837251-25837548,
           25837622-25837776,25837959-25838097,25838185-25838266,
           25838337-25838455,25838537-25838664,25838810-25838983,
           25839052-25839203,25839393-25839425,25840362-25841331,
           25841412-25841537
          Length = 1011

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 422 QCHQNQHEVRVGDKHAVAXPDGTAASEECNDESDAPNNHTGHRR 291
           +C  + + +  GD+H +A  D T  S  CN  +    N    RR
Sbjct: 186 ECLDHYNALHPGDEHDLAPGDVTLCSAPCNSTTWTHGNFVARRR 229


>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 300 PPALL*SWSLTAQSLCQRIVNEPPIRD 220
           PPA+L  +S    S+C++IV EPP+ D
Sbjct: 400 PPAVLQGFSPEVPSVCEKIV-EPPLAD 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,942,369
Number of Sequences: 37544
Number of extensions: 269314
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)