Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D13
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    34   0.001
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 18/99 (18%), Positives = 39/99 (39%)
 Frame = +3

Query: 138 MGCGEFLVKYVXXXXXXXXXXXXXXXXXXXXXVHLQFADIETVLSETSFRVAPVACMIVX 317
           M CG  ++KY+                     +HLQ   +   + ET      +  +++ 
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQI-ETGLAFPSITLIVLG 59

Query: 318 XXXXXXXXXXXXXXXRXSNCMLVTYANFMLVLMALKLTL 434
                          R S+CM +T+A+F+L ++ +++ +
Sbjct: 60  SIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAV 98


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 338 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 195
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 338 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 195
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 338 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 195
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 338 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 195
           CN+E       T  +RYS +   + + Y +E    +  ET +  +  R
Sbjct: 23  CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 272 RDQLQSSAGGLYDCWGHRFHHCILRMLRCHQG 367
           RD  + + GG+Y    H  HH     +  H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +2

Query: 329 HHCILRMLRCHQGXQLHACHL-RELH 403
           +HC L    CH G  L    L R LH
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLH 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,649
Number of Sequences: 438
Number of extensions: 2592
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)