Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D12
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    32   0.100
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.23 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.6  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   8.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.6  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 32.3 bits (70), Expect = 0.100
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +2

Query: 461 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 631
           VNS G+   E   +   F ++  ++ E+ K  +  P    +   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379

Query: 632 DVDVGLETAQKTNEIAKAVEAXTYAVNIRDDAEFLPI 742
           DVD+ LET +K  ++    E   Y  N  +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = -3

Query: 729 SASSLMLTAYVXASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 550
           S+SS   TA   +S++  IS    + S PTSTS T+ S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 549 LLLSS 535
              SS
Sbjct: 315 SSFSS 319



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -3

Query: 690 STAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGL----LLSSGCFC 523
           ST+  IS    + S PTSTS T+ S  +S SS  + +   S+ S++        SS    
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344

Query: 522 FSGKVIFNTSFS*TQLPSEFTS 457
            S     ++SFS T   S+ +S
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSS 366


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -3

Query: 714 MLTAYVXASTAFAI--SLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 541
           ++ + V A+ +F +  + V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 70  IILSIVSAALSFYLDTNAVWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 197 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 376
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 377 VKAKN 391
            K  N
Sbjct: 163 SKKLN 167


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 518  LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 640
            +K ++PE + +PV    +  ST  + +E E T +++V   +
Sbjct: 908  IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = -3

Query: 747 YGIGKNSASSLMLTAYVXASTAFAISLVFWAVSKPTSTS---RTLL---SVVNSISSRLT 586
           Y + ++S +S++  AY+  S +   S V   ++ PTS+S    +LL   S+  S SS   
Sbjct: 387 YSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTFVTSLLRRSSIDGSASSSSA 446

Query: 585 FVEVVSVGSAT 553
            + V +V S+T
Sbjct: 447 SLAVPTVSSST 457


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 242  EMQHLDNMMKELSLKFPSIINEGRV 316
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 109 AAVSAAPQYYHGSSHWPYHHYDPFQSL 189
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = -3

Query: 732  NSASSLMLTAYVXASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSAT 553
            NS++ +  ++ + +STA A S +  + +  TS+S  +L+    ISS       V +GS++
Sbjct: 3439 NSSTPITSSSVLNSSTAIASSSILNSSTPITSSS--VLNSSTPISSSTVITSSVVIGSSS 3496

Query: 552  GLLLSS 535
             L  +S
Sbjct: 3497 VLSYAS 3502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,561
Number of Sequences: 5004
Number of extensions: 63387
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)