Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D11
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   238   7e-64
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   4e-08
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    53   5e-08
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   3.7  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   8.6  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   8.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  238 bits (583), Expect = 7e-64
 Identities = 111/216 (51%), Positives = 145/216 (67%), Gaps = 1/216 (0%)
 Frame = +1

Query: 235 NPLFEKRPKNFAVGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 414
           NPLF  RP++F +GQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 415 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXR-PNTIRSGTNTVTKLV 591
           K TA  +FK+L KYRPET                         + P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 592 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLGALVHRKTCTCLALTNV 771
           E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K RLG ++H+KT   LA+T V
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEV 203

Query: 772 ESGDRASFSKVVEAIXTNFNERYEELRKHWGGGVLG 879
              D+   + +V A+  NF+ +Y+E R+ WGGG++G
Sbjct: 204 REEDKNELASIVSAVDANFSAKYDESRRKWGGGIMG 239


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = +1

Query: 556 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLGALVH 735
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 736 RKTCTCLALTNVESGDRASFSKVVEAIXTNFNERYEELRK 855
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = +1

Query: 556 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 723
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K  LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  ILLFCFGHFRRKFGIRFRSRIFSW 112
           +L  C+G   R+ G+++ S I SW
Sbjct: 22  VLFLCYGKSSRELGVKWNSDIRSW 45


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 349 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 450
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 552 YHPIRHKHSHQAGREEEGAACGHR 623
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,043
Number of Sequences: 5004
Number of extensions: 58955
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)