Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_D07
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.31
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 31 1.2
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 30 2.2
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 30 2.9
04_04_0347 + 24564589-24565296 30 2.9
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 5.0
08_02_1129 - 24513568-24514296,24515380-24515817 29 5.0
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 29 5.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 5.0
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 5.0
10_08_0933 + 21661209-21662813 29 6.7
07_01_0229 - 1672126-1673976,1674427-1675404 28 8.8
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.31
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 300 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 398
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.1 bits (67), Expect = 1.2
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +3
Query: 138 PRHSTTMARHIGRITITXP--FSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPS 311
P+ S+T +G I P F P + L H WS L+ + H+ L F
Sbjct: 303 PQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGSWSFLS--IAHI--------LCF-- 350
Query: 312 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 470
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +2
Query: 83 LHVAXSALVLCGLLAAVSAAPQYYHGSSHWPYHHYXPVQSLRSGKHVGHTFALVQPCQRN 262
L +A +A G+ A+ AAP + + W H PV + S KH+ +VQP
Sbjct: 225 LKIAAAARSSNGVAPAI-AAPGMH--PAQWNAHFGHPVPKIVSRKHIKKKPKVVQPLTCE 281
Query: 263 ATLGQHDEGAVVEVPQHYKRRTRGRRQVSDIYSP 364
Q D V+ + + K+ + ++ D +P
Sbjct: 282 VCKIQCDTPEVLRIHKTGKKHKKNLERLQDSITP 315
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 559 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPXRPMR 690
A G+ P P V SS PR C LTS +R+P P R
Sbjct: 5 AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 98 SALVLCGLLAAVSAAPQYYHGSSHWPY-HHYXP 193
S L+ LLAA SAA +H ++ PY HH+ P
Sbjct: 6 SMLLASSLLAAASAARADHHSPAYAPYPHHHAP 38
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 637 ATCGTLTSAWRQPXRPMRSRKL*KRPRTLSTSETMRSS 750
A C TS+ R+ RPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 672 LSPSRRQRPARCSRW*TPSLHDLHS*RSSQWALQLASC 559
+SP QR A CSRW PS L + + A+QL C
Sbjct: 262 VSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 616 RWSSPPRATCGTLTSAWRQPXRPMR 690
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 543 KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRD 650
+QP SKRP AE T TT++ ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 207 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQIS 356
+++++L+ LA+E+Q D+++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>10_08_0933 + 21661209-21662813
Length = 534
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Frame = +2
Query: 152 YHGSSHW-----PYHHYXPVQSLRSGKHV--GHTFALVQPCQRNATLGQHDEGAVVEVPQ 310
YH W P + LR G V +T P +A QH + + +P
Sbjct: 142 YHSEGGWDGLLDPLDQNLRREVLRYGDFVQAAYTAFHSMPSSSSAAASQHSQHRTLVLPD 201
Query: 311 HYKRRTRGRRQVSDIYSPAWLR 376
R TR S + PAW R
Sbjct: 202 RSYRPTRSLFATSSLSIPAWAR 223
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = -2
Query: 706 STAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLLS 554
+T ++L + +++PT +TLLS+ ++S+ LT V V + +ATG + S
Sbjct: 483 ATWIDVALAPFKMARPT---KTLLSMSYNLSAVLTNVAYVGLSAATGQIES 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,281,771
Number of Sequences: 37544
Number of extensions: 429049
Number of successful extensions: 1365
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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