Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D04
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    33   0.043
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.9  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.5  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   6.5  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    26   8.6  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 433 TSTTLTFASRTAAKDASTH-CARRPKSARASLTTSRTPAASA--SLHARLDVKMATAP 597
           T+T     S+     A  H  AR+P S     TT  TPA SA  S HAR   K A+AP
Sbjct: 464 TTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAP 521


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 420 GYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGF 551
           G   NI+  N   P  ++  + +L TA     CFP   KN G F
Sbjct: 85  GMAGNIFARNRIAP--ARWLITSLSTAATFMFCFPKTSKNIGAF 126


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +1

Query: 643 RKYCVPLCSNNCAGVGNCTSPNRCDCAPGYQATHDGSCXPQCRDCAPDACVAPNVC-SGP 819
           R+   P+C  +   +GN +SP     +P  +AT   +  P  ++  P     P +  S  
Sbjct: 343 RQQTCPICRRSV--IGNQSSPTGIPASPNVRATQIATQVPNPQN-TPTTTAVPGITNSSN 399

Query: 820 TXIPLPGQNTQIPTSNYPGYHSST 891
              P       +P +N  G+ + T
Sbjct: 400 QGDPQASTFNGVPNANSSGFAAHT 423


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 441 NPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFC 554
           NP  C+    K    +LC   +   C+  H KNAG  C
Sbjct: 338 NP-CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLC 374


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 658 PLCSNNCAGVGNCTSPNRCDCAPGY 732
           P     C     C SPN  +C PGY
Sbjct: 365 PSLCRTCPPNAICPSPNYVECKPGY 389


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +1

Query: 442 TLTFASRTAAKDASTHCARRPKSARASLTTSRTPAASASLHARLDVKMATAPVESASAGD 621
           T T    T +  +ST       ++ A+ TTS   + S+S     +   ++ P+ + S+ D
Sbjct: 45  TSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSD 104

Query: 622 GF 627
            F
Sbjct: 105 SF 106


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 182 DPRLRVLTAGGYQQEPEHIYNQHCSRAVYQGRGDLSLQNADNYNIKXL 39
           DPR   +   G +Q       Q    A+    GDL++++  NY+IK L
Sbjct: 152 DPRNISVPLAGEEQTNNRAELQAIILALENTSGDLTIRSDSNYSIKSL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,469
Number of Sequences: 5004
Number of extensions: 81919
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)