Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D02
         (978 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664     31   1.4  
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159     29   4.3  
03_05_1166 - 30876802-30876899,30877233-30878685                       28   9.8  

>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
          Length = 263

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = +1

Query: 787 RXQPWGPRVPAKFRXPGPXFXQHPTXXXEPPXXDPXXSPXEXSXPS 924
           R QP  P  PA  R PGP     PT     P   P   P   S P+
Sbjct: 151 RAQPDEPAAPAARRPPGPAGGDEPTPIVGVPTAVPAGFPPPVSSPN 196


>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
          Length = 400

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 805 PRVPAKFRXPGPXFXQHPTXXXEPPXXDPXXSPXEXSXPSXNTP 936
           PR PA  R P P   + P    +P    P  SP     P   TP
Sbjct: 5   PRTPAPDRPPPPVPVRVPVPEPQPEPETPQASPSPPPAPDPPTP 48


>03_05_1166 - 30876802-30876899,30877233-30878685
          Length = 516

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 612 EXWGTRRPKLAKPTPAXF 665
           E W TR+P+ +K TPA F
Sbjct: 242 EPWHTRKPRFSKETPASF 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,816
Number of Sequences: 37544
Number of extensions: 193947
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)