Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_D02
         (978 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    30   2.9  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   6.7  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.8  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    28   8.8  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    28   8.8  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    28   8.8  

>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 21/71 (29%)
 Frame = -2

Query: 974 GGGXXXXVGXXXXGVXSEGXXXSXGXXXGSXXGGSKXXVGCCXKXGPGXRNFAGTRGPXG 795
           GGG    VG    G    G     G   G   GG     G C           G RGP G
Sbjct: 90  GGGYGGAVGGGGGGGYGGGHGGGHGGAVGGGYGGGGGGGGGCQCSPSSNTCPPGPRGPPG 149

Query: 794 XXRLXTXPXEP 762
              L   P  P
Sbjct: 150 QAGLDGLPGAP 160


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +1

Query: 796  PWGPRVPAKFRXPGPXFXQHPTXXXEPPXXDPXXS-PXEXSXPSXNTPXXXXPTXXXXPP 972
            P GP  P+    PGP     P+   +P    P        S PS N P    P+     P
Sbjct: 965  PNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSP 1024

Query: 973  PG 978
             G
Sbjct: 1025 NG 1026


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -2

Query: 908 SXGXXXGSXXGGSKXXVGCCXKXGPGXRNFAGTRGPXGXXRLXTXPXEPFXG 753
           S G   G   GG     GCC    PG     G  G  G       P  P  G
Sbjct: 83  STGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -2

Query: 908 SXGXXXGSXXGGSKXXVGCCXKXGPGXRNFAGTRGPXGXXRLXTXPXEPFXG 753
           S G   G   GG     GCC    PG     G  G  G       P  P  G
Sbjct: 83  STGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -2

Query: 908 SXGXXXGSXXGGSKXXVGCCXKXGPGXRNFAGTRGPXGXXRLXTXPXEPFXG 753
           S G   G   GG     GCC    PG     G  G  G       P  P  G
Sbjct: 83  STGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -2

Query: 908 SXGXXXGSXXGGSKXXVGCCXKXGPGXRNFAGTRGPXGXXRLXTXPXEPFXG 753
           S G   G   GG     GCC    PG     G  G  G       P  P  G
Sbjct: 83  STGGAGGGGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKG 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,798
Number of Sequences: 27780
Number of extensions: 147608
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)