Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_C21
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.013
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.013
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.013
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 36 0.031
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.054
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.054
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.054
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 33 0.22
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 32 0.67
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 32 0.67
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 32 0.67
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 32 0.67
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 0.88
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 0.88
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.7
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 4.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.7
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 6.2
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 6.2
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 28 8.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Frame = +1
Query: 457 PPXEKX---APXXGKGGCXXXPP-SRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXX 624
PP K AP GG PP + PP G P P P GP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 625 PXPXKXPPPGGXPXKQXGXPGG 690
P P PP G P PGG
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGG 767
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRX---YXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXP 627
PP P G PP GPP G P P P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCP 769
Query: 628 XPXKXPPPGG 657
P PPPGG
Sbjct: 770 PPPPPPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Frame = +1
Query: 457 PPXEKX---APXXGKGGCXXXPP-SRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXX 624
PP K AP GG PP + PP G P P P GP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 625 PXPXKXPPPGGXPXKQXGXPGG 690
P P PP G P PGG
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGG 767
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRX---YXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXP 627
PP P G PP GPP G P P P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCP 769
Query: 628 XPXKXPPPGG 657
P PPPGG
Sbjct: 770 PPPPPPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Frame = +1
Query: 457 PPXEKX---APXXGKGGCXXXPP-SRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXX 624
PP K AP GG PP + PP G P P P GP
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
Query: 625 PXPXKXPPPGGXPXKQXGXPGG 690
P P PP G P PGG
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGG 350
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRX---YXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXP 627
PP P G PP GPP G P P P P P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCP 352
Query: 628 XPXKXPPPGG 657
P PPPGG
Sbjct: 353 PPPPPPPPGG 362
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.031
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Frame = +1
Query: 457 PPXEKXAPXX--GKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXX-P 627
PP AP G GG PP GP G + G P P P P GP P
Sbjct: 393 PPSAFGAPQGPGGPGGYGPPPPG----GPGAPGSY-GPPQGGPGG-FGPPPPGGPGAYGP 446
Query: 628 XPXKXPPPGGXPXKQXGXPGG 690
P PP G P G PGG
Sbjct: 447 PPTGFPPVGAPPPGAAGAPGG 467
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +1
Query: 460 PXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXK 639
P + AP G G PP GPP G G P + P P+ P P
Sbjct: 321 PPPQGAPQQGFGA----PPQ----GPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVS 372
Query: 640 XPPPGGXPXKQXGXPG 687
P P Q G PG
Sbjct: 373 SAPGNFAPPPQSGPPG 388
Score = 28.7 bits (61), Expect = 6.2
Identities = 28/88 (31%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Frame = -2
Query: 692 PPPGF--PXCXLGXP--PGGGXXWGXGXXXGPLGXGXXXRXXGXXXGFPXQXPXXGGPX* 525
PP F P G P PGG +G GP G G GF P GGP
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGF--GPPPPGGPGA 443
Query: 524 XREGGXNXXP-PFPXXGAXFSXGGIPHA 444
P P GA + GG P A
Sbjct: 444 YGPPPTGFPPVGAPPPGAAGAPGGNPFA 471
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.054
Identities = 21/79 (26%), Positives = 23/79 (29%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPX 636
PP K +P G PP+ PP G P P P P P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 637 KXPPPGGXPXKQXGXPGGG 693
PP G P P G
Sbjct: 300 PPPPRGSPPTGSLPPPQAG 318
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.054
Identities = 21/79 (26%), Positives = 23/79 (29%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPX 636
PP K +P G PP+ PP G P P P P P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 637 KXPPPGGXPXKQXGXPGGG 693
PP G P P G
Sbjct: 321 PPPPRGSPPTGSLPPPQAG 339
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.054
Identities = 21/79 (26%), Positives = 23/79 (29%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPX 636
PP K +P G PP+ PP G P P P P P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 637 KXPPPGGXPXKQXGXPGGG 693
PP G P P G
Sbjct: 306 PPPPRGSPPTGSLPPPQAG 324
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/80 (31%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXX-GXWXGXPXXXPXXRXXXPXPKGPXXXPXP 633
PP P G+ G P GPP G P P + P P GP P P
Sbjct: 112 PPGPPGPP--GRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGP 169
Query: 634 XKXPPPGGXPXK--QXGXPG 687
P P G Q G PG
Sbjct: 170 KGLPGPQGDAGTSGQDGVPG 189
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.67
Identities = 32/116 (27%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Frame = +1
Query: 349 GXGXGXXGGGGXGXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXXGKGGCXXXPPSRXY 528
G G GGGG G G N PP +P GK G P +
Sbjct: 85 GGAGGGGGGGGGGCDGCCNPG---------------PPGPGGSP--GKPGKPGKPGAPGA 127
Query: 529 XGPPXXGXWXGX-PXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPGGG 693
G P G P P + P GP P P P G P G G G
Sbjct: 128 PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPG 183
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.9 bits (69), Expect = 0.67
Identities = 32/116 (27%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Frame = +1
Query: 349 GXGXGXXGGGGXGXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXXGKGGCXXXPPSRXY 528
G G GGGG G G N PP +P GK G P +
Sbjct: 85 GGAGGGGGGGGGGCDGCCNPG---------------PPGPGGSP--GKPGKPGKPGAPGA 127
Query: 529 XGPPXXGXWXGX-PXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPGGG 693
G P G P P + P GP P P P G P G G G
Sbjct: 128 PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPG 183
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.9 bits (69), Expect = 0.67
Identities = 32/116 (27%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Frame = +1
Query: 349 GXGXGXXGGGGXGXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXXGKGGCXXXPPSRXY 528
G G GGGG G G N PP +P GK G P +
Sbjct: 85 GGAGGGGGGGGGGCDGCCNPG---------------PPGPGGSP--GKPGKPGKPGAPGA 127
Query: 529 XGPPXXGXWXGX-PXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPGGG 693
G P G P P + P GP P P P G P G G G
Sbjct: 128 PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPG 183
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.67
Identities = 32/116 (27%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Frame = +1
Query: 349 GXGXGXXGGGGXGXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXXGKGGCXXXPPSRXY 528
G G GGGG G G N PP +P GK G P +
Sbjct: 85 GGAGGGGGGGGGGCDGCCNPG---------------PPGPGGSP--GKPGKPGKPGAPGA 127
Query: 529 XGPPXXGXWXGX-PXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPGGG 693
G P G P P + P GP P P P G P G G G
Sbjct: 128 PGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPG 183
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.88
Identities = 26/79 (32%), Positives = 26/79 (32%)
Frame = -2
Query: 692 PPPGFPXCXLGXPPGGGXXWGXGXXXGPLGXGXXXRXXGXXXGFPXQXPXXGGPX*XREG 513
PPP P C G GGG G G G G G G G GG G
Sbjct: 54 PPPPPPACGGGCGGGGGGCGGGGGGCG--GGGGCGGGGGGCGGGGGGCGGGGGCG----G 107
Query: 512 GXNXXPPFPXXGAXFSXGG 456
G PP P G GG
Sbjct: 108 GCAPPPPPPACGGGCGGGG 126
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.88
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 263 GXXPPPXGXGXXPXXXXXFXXXGPXXPPXXGGXXP 159
G PPP G G P F P PP GG P
Sbjct: 72 GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 31.5 bits (68), Expect = 0.88
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 PXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPP-G 654
P G+G + Y GPP G G P P + P P P P + G
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYG 733
Query: 655 GXPXKQXGXP 684
P Q G P
Sbjct: 734 YPPPPQPGHP 743
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 31.5 bits (68), Expect = 0.88
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 PXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPP-G 654
P G+G + Y GPP G G P P + P P P P + G
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYG 733
Query: 655 GXPXKQXGXP 684
P Q G P
Sbjct: 734 YPPPPQPGHP 743
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 535 PPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPG 654
PP G W P P P G P P + PPG
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG 329
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPX-P 633
PP P G PPSR GPP G P P P P P
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRF--GPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Query: 634 XKXPPPGGXPXKQXGXPGG 690
PPP P + P G
Sbjct: 361 GMYPPP--PPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 535 PPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPG 654
PP G W P P P G P P + PPG
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG 339
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +1
Query: 457 PPXEKXAPXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPX-P 633
PP P G PPSR GPP G P P P P P
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRF--GPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Query: 634 XKXPPPGGXPXKQXGXPGG 690
PPP P + P G
Sbjct: 371 GMYPPP--PPSRPPAPPSG 387
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.7
Identities = 29/104 (27%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Frame = +1
Query: 361 GXXGGGGX-GXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXXGKGGCXXXPP--SRXYX 531
G G G G PG R PP K P G P ++
Sbjct: 101 GTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPL 160
Query: 532 GPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXP 663
GPP G P P P KGP P P P P G P
Sbjct: 161 GPP------GPPG--PEGPNGEPGNKGPAGPPGPGGKPGPAGPP 196
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 598 PXPKGPXXXPXPXKXPPPGGXPXKQXGXPGGG 693
P P GP P P P P G P + P G
Sbjct: 164 PGPAGPPGGPGPPGPPGPEGAPGEDGNTPSRG 195
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = +1
Query: 478 PXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPGG 657
P G G P + G P G P P P GP P P GG
Sbjct: 211 PPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGG 270
Query: 658 XPXKQXGXPG 687
Q G PG
Sbjct: 271 --AAQPGPPG 278
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/114 (27%), Positives = 31/114 (27%), Gaps = 1/114 (0%)
Frame = +1
Query: 349 GXGXGXXGGGGXGXPGXANXXXXXXRXXXXXXXXXXPPXEKXAPXX-GKGGCXXXPPSRX 525
G G G GGG G G N P P GKG PS
Sbjct: 100 GGGGGEAAGGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAAPCEPST- 158
Query: 526 YXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPG 687
PP P P P GP P P P G P G PG
Sbjct: 159 ---PPPCQPCPAGP----------PGPPGPDGTPGEPGGPGPAGSPAGPSG-PG 198
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 559 GXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPGGXPXKQXGXPG 687
G P P + P P+GP P P G KQ G PG
Sbjct: 237 GGPDGIPMEKKSPPGPRGPPGPAGPDGPQGPEGRSGKQ-GPPG 278
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = +1
Query: 478 PXXGKGGCXXXPPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKGPXXXPXPXKXPPPGG 657
P KGG P + G G P P P P GP P P P G
Sbjct: 198 PAGNKGG-QGPPGNAGAPGANGNPGNAGTPGI-PGKTIEVPAPAGPAGAPGPAGPPGTAG 255
Query: 658 XPXKQXGXPG 687
P Q G PG
Sbjct: 256 TPGSQ-GQPG 264
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 PPSRXYXGPPXXGXWXGXPXXXPXXRXXXPXPKG-PXXXPXPXKXPPP 651
PP PP G G P P P P+G P P K PPP
Sbjct: 699 PPMFNLNAPPPPGI-PGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.157 0.563
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,917
Number of Sequences: 27780
Number of extensions: 242438
Number of successful extensions: 1076
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -