Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_C16
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    46   5e-05
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    46   5e-05
Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical pr...    33   0.39 

>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
 Frame = +1

Query: 352 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRV-LKGVILLIFEKALDEPKYSSMYAQL 528
           + +KVR ++NK+TP   +                 L  V+ ++F+KA++EPK+ ++YA++
Sbjct: 516 VCKKVRSLMNKVTPTSQRPLTEEFISYNVSSNDAQLAQVVEIVFDKAVEEPKFCALYAEM 575

Query: 529 CKRLSEEAPNFEPPGQPCTFKLLLLNKCRTEFENRTXXFAAFEDKTLSPEEEE 687
           CK  ++        G    F+  +L + +  F+++    A   DK    E+EE
Sbjct: 576 CK--AQANHELSQTGGKSAFRNKVLTRTQMTFQDKKDIDA---DKLAIIEKEE 623


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
 Frame = +1

Query: 352 IFRKVRGILNKLTPEKFQKXXXXXXXXXXXXXRV-LKGVILLIFEKALDEPKYSSMYAQL 528
           + +KVR ++NK+TP   +                 L  V+ ++F+KA++EPK+ ++YA++
Sbjct: 517 VCKKVRSLMNKVTPTSQRPLTEEFISYNVSSNDAQLAQVVEIVFDKAVEEPKFCALYAEM 576

Query: 529 CKRLSEEAPNFEPPGQPCTFKLLLLNKCRTEFENRTXXFAAFEDKTLSPEEEE 687
           CK  ++        G    F+  +L + +  F+++    A   DK    E+EE
Sbjct: 577 CK--AQANHELSQTGGKSAFRNKVLTRTQMTFQDKKDIDA---DKLAIIEKEE 624


>Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical
           protein C54E10.5 protein.
          Length = 420

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = -3

Query: 621 FSATFVKQQKLKCARLTRRLEVGSLFAEPLAELCVHRRVLRLVQGFLKNEKDDALEDPVG 442
           F  T V  +K KC + T + E+G+   E L + C  ++ + L     +N + D  +D   
Sbjct: 41  FRRTVVLNRKYKCIQKTGKCEIGAGGEEKLCKFCRFKKCIDLGM-TTENVRTDFKDDSED 99

Query: 441 VQFEPEEIIAQLLKFLRRELVENTTNLAEYDVV 343
              +  +  + +     +++V    N  EY +V
Sbjct: 100 TSSQSPQSTSSMEVTSSQQIVAKVRNRVEYYIV 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,361
Number of Sequences: 27780
Number of extensions: 268793
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)