Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_C13
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    31   1.6  
06_03_0565 - 22308074-22309510,22309670-22309723                       29   3.8  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   5.0  
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    29   5.0  
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107...    29   6.6  

>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 410 GGATSGFVFSAWMKKGIIAVPAAVVLGAIAVVKKTGI 520
           GG   G +F+A +K  ++AV ++  +G   +VKK G+
Sbjct: 12  GGGGGGDLFAANLKGSLLAVASSAFIGVSFIVKKKGL 48


>06_03_0565 - 22308074-22309510,22309670-22309723
          Length = 496

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 561 VDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTK 427
           +D    G K+ P+S+PVF  T I          IIPF  +A  T+
Sbjct: 285 MDTRVGGLKVPPASLPVFPVTFIILLAPVYDHIIIPFARRATGTE 329


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 397  EFIVFPTNILGNVGSECEGNCHTH*RAY-NIAHSTDCIDKT 278
            +F++FP   L    +EC  NC     AY N++ S    DKT
Sbjct: 1228 KFVLFPNRTLDACAAECSSNCSCVAYAYANLSSSISKGDKT 1268


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 484 YHRGRHRDNPLFHPSTKHKARCGTTQEVIEFIVFPTNILGNVGSECEG 341
           Y  GRHR +  F+PS     +  +    +E +VF    LG V    EG
Sbjct: 279 YPYGRHRQHTKFNPSCDRLLKTFSRIRCLEMLVFIEPHLGGVNPLMEG 326


>10_07_0135 +
           13308839-13308899,13310146-13310495,13310574-13310709,
           13310806-13310942,13311041-13311164,13313393-13313871
          Length = 428

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 317 GPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 496
           G ++  +    FT +  +N   KN K +  LG    G+V+  W+ +  +A PA    G +
Sbjct: 62  GEILSSSNLKAFTLSELKNAT-KNFKPDSLLGEGGFGYVYKGWIDEQTLA-PARPGSGMV 119

Query: 497 AVVKK 511
             VKK
Sbjct: 120 VAVKK 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,986,685
Number of Sequences: 37544
Number of extensions: 391421
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)