Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_C13
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    31   1.1  
Z82083-8|CAB04968.2|  374|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AL021480-6|CAD90181.1|  374|Caenorhabditis elegans Hypothetical ...    29   5.9  

>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 687 YFLKFIYIFYMIFYCLEPS-----VHPFNSSISLRRVQSCLTDLIVLV 559
           Y LKFI+IFY++F   E +     V  F+  I+ +   S + DLI  +
Sbjct: 160 YILKFIWIFYLLFVIKESTGIILYVLKFSKMITTKENHSVILDLITFI 207


>Z82083-8|CAB04968.2|  374|Caenorhabditis elegans Hypothetical
           protein ZK1010.2 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 501 W*RRQASMKAGSFSQMRHNLLKQSNQLN 584
           W R+QA M++G F+ +RH++      LN
Sbjct: 247 WSRKQALMRSGEFAALRHSINLDCTLLN 274


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 37   LXYFCSLSKILPSXKPXXIRVCVTPLXLQSQKNA 138
            L  +C LSK+    KP  + V   PL   S KN+
Sbjct: 1105 LTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>AL021480-6|CAD90181.1|  374|Caenorhabditis elegans Hypothetical
           protein ZK1010.2 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 501 W*RRQASMKAGSFSQMRHNLLKQSNQLN 584
           W R+QA M++G F+ +RH++      LN
Sbjct: 247 WSRKQALMRSGEFAALRHSINLDCTLLN 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,015
Number of Sequences: 27780
Number of extensions: 362718
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)