Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_C03
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.95 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 806 SPLXGGXXPPPPPPXXPXEG 747
           +P+ GG  PPPPPP     G
Sbjct: 755 APIMGGPPPPPPPPGVAGAG 774


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +1

Query: 790  PPXRGEIPXXPQXGGXPPGKKXXXKXPKKGPTPXXGPXXGXFSPXAPPPP 939
            PP R +    PQ     P        P   P P   P      P APPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTP-----PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 782 PPPPPPXXPXE 750
           PPPPPP  P +
Sbjct: 239 PPPPPPTLPPQ 249



 Score = 20.6 bits (41), Expect(2) = 7.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -1

Query: 806 SPLXGGXXPPPPPPXXP 756
           +P      P PPPP  P
Sbjct: 228 TPKQADPLPAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,414
Number of Sequences: 5004
Number of extensions: 24707
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)