Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_B18
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 225 3e-59
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 35 0.077
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 34 0.13
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 31 1.2
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 6.7
09_06_0101 - 20864151-20864464,20864616-20864805,20865149-208653... 29 6.7
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454... 29 6.7
11_02_0137 - 8702661-8703495,8703820-8704628 28 8.8
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 8.8
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 225 bits (551), Expect = 3e-59
Identities = 100/129 (77%), Positives = 108/129 (83%)
Frame = +1
Query: 388 INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTT 567
INYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAEER+DGSRRTT
Sbjct: 78 INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTT 137
Query: 568 RYDIDMTKCIYCGFCQEACPVDAIVEXPNFEFSXXXXXXXXXXXXXXXSNGDXWESEIPS 747
RYDIDMTKCIYCGFCQEACPVDAIVE PNFEF+ NGD WE+EI +
Sbjct: 138 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAA 197
Query: 748 NIRADHLYR 774
N+ ++ LYR
Sbjct: 198 NLESESLYR 206
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 35.1 bits (77), Expect = 0.077
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 487 KLCEAICPAQAITIEA----EE--RKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 639
K CE +CPA AI +E EE + D S + +C CG C CP D I
Sbjct: 134 KPCEKVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYGCGRCLSVCPYDRI 190
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 466 EERCIACKL---CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 636
E+RC K C CP A + E SR + I CI CG C + CP DA
Sbjct: 17 EDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSL---ISEELCIGCGICVKVCPFDA 73
Query: 637 I 639
I
Sbjct: 74 I 74
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 466 EERCIACKLCEAICPAQAITI 528
EE CI C +C +CP AI I
Sbjct: 56 EELCIGCGICVKVCPFDAIQI 76
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 187 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWT-ELARGFAVTLA 363
A Y S + N+ YP++ P YK + ++ F + D + T+F +L G+ V +
Sbjct: 189 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYFPDLDDPSFNTVFGVRDLFYGYDVLVE 248
Query: 364 HIFKEPATINY 396
++ +PA + Y
Sbjct: 249 NLM-DPAHVPY 258
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 592 CIYCGFCQEACPVDAI 639
CI CG C + CP DAI
Sbjct: 55 CIGCGICVKKCPFDAI 70
>09_06_0101 -
20864151-20864464,20864616-20864805,20865149-20865310,
20866073-20866186
Length = 259
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 320 IV*AALSDIALKDMSCSSAFTYLYPGMFCG*TFS--TFPSDDELYCARFTITPLTPDART 147
+V A+ + IA KD T+++PG +C T + P D + F + T T
Sbjct: 16 LVAASPAAIAAKDDKIFYQITFMWPGAYCAQTKAGCCMPKTDVAPASDFYVAGFTVYNAT 75
Query: 146 RDETENIFAKDIFSLN*VVSL-ELTEFINTSRRPTK 42
+ + + + F +N + + L ++ N R P+K
Sbjct: 76 TNSSLSSCSNTPFDMNQIGDVTRLMQYWNNIRCPSK 111
>02_03_0012 -
13940583-13940853,13942281-13942509,13945275-13945476,
13945961-13946278,13947321-13947419
Length = 372
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 28 GILKILVGRRLVFINSVNSKETT 96
GIL +L+G+R+ F ++N++ETT
Sbjct: 213 GILWVLLGKRVWFFPNINAEETT 235
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 28.3 bits (60), Expect = 8.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 285 RHVLFLCIHIFISRYVLW 232
RH+L LCI +F++ Y W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 187 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFW 327
+Q + + N+E++ P+ + V AEE+D RA + +A M W
Sbjct: 156 SQVDGTYQFNLEELVPKLCELAQIVKAEEKDNMLRASTLQALSAMIW 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,219
Number of Sequences: 37544
Number of extensions: 403933
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -