Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_B18
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical pr... 255 3e-68
AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH oxidored... 255 3e-68
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 32 0.49
U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated p... 28 7.9
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 28 7.9
U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 28 7.9
>U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical
protein T20H4.5 protein.
Length = 212
Score = 255 bits (625), Expect = 3e-68
Identities = 120/181 (66%), Positives = 132/181 (72%), Gaps = 1/181 (0%)
Frame = +1
Query: 235 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 411
Q YK+V E D + + +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32 QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91
Query: 412 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 591
PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92 PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151
Query: 592 CIYCGFCQEACPVDAIVEXPNFEFSXXXXXXXXXXXXXXXSNGDXWESEIPSNIRADHLY 771
CIYCG CQEACPVDAIVE PNFE+S NGD WE E+ SN++A++LY
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLY 211
Query: 772 R 774
R
Sbjct: 212 R 212
>AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH
oxidoreductase complex I 23.8kDa subunit protein.
Length = 212
Score = 255 bits (625), Expect = 3e-68
Identities = 120/181 (66%), Positives = 132/181 (72%), Gaps = 1/181 (0%)
Frame = +1
Query: 235 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 411
Q YK+V E D + + +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32 QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91
Query: 412 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 591
PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92 PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151
Query: 592 CIYCGFCQEACPVDAIVEXPNFEFSXXXXXXXXXXXXXXXSNGDXWESEIPSNIRADHLY 771
CIYCG CQEACPVDAIVE PNFE+S NGD WE E+ SN++A++LY
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLY 211
Query: 772 R 774
R
Sbjct: 212 R 212
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.49
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +1
Query: 406 KGPLSPRFRGEHALRRYPSGEERCIA--CKL-CEAICPA-----QAITIEAEERKDGSRR 561
KGPL + LR ++RC C L C+ CP Q I +EA
Sbjct: 4 KGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEAT-------- 55
Query: 562 TTRYDIDMTKCIYCGFCQEACPVDAI 639
+T I CI CG C + CP DAI
Sbjct: 56 STISQISEILCIGCGICVKKCPYDAI 81
>U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated
protein 73, isoform c protein.
Length = 928
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 635 QSWXVRISSFQQRH--MRNFYTIRRNFCRTAXNGRVRSPPISELIIC 769
++W + ++ ++ H +RNF +F A N RVRS P + IC
Sbjct: 876 ENWLIASTNIEKTHVSLRNFARNSYSFRVFAYNQRVRSAPSQCICIC 922
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 635 QSWXVRISSFQQRH--MRNFYTIRRNFCRTAXNGRVRSPPISELIIC 769
++W + ++ ++ H +RNF +F A N RVRS P + IC
Sbjct: 2436 ENWLIASTNIEKTHVSLRNFARNSYSFRVFAYNQRVRSAPSQCICIC 2482
>U41278-1|AAK31511.1| 305|Caenorhabditis elegans Hypothetical
protein F33G12.2 protein.
Length = 305
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 505 CPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 606
CP + A + K G+ R RY++D C+ CG
Sbjct: 4 CPT--VRARAIDCKQGAVRAVRYNVDGNYCVTCG 35
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 635 QSWXVRISSFQQRH--MRNFYTIRRNFCRTAXNGRVRSPPISELIIC 769
++W + ++ ++ H +RNF +F A N RVRS P + IC
Sbjct: 2436 ENWLIASTNIEKTHVSLRNFARNSYSFRVFAYNQRVRSAPSQCICIC 2482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,449
Number of Sequences: 27780
Number of extensions: 373112
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -