Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B09
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.043
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
12_02_1188 + 26801833-26802225                                         30   2.8  
12_01_0816 + 7502669-7503145                                           29   6.5  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 726 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 619
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 543 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 689
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 696 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 598
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 823 RXSGRAERGVXAHSPAWSERPTPN*DTYSVXYEKAPRFPKGERR 692
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 717 HASRREKGGQVSGKRQGRNRRAHEGAXQGETP 622
           H   R +   +  +R+GR R AHEG   G  P
Sbjct: 81  HGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,669,050
Number of Sequences: 37544
Number of extensions: 528552
Number of successful extensions: 1424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)