Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B07
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    64   4e-11
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   9.0  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +1

Query: 172 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 291
           +YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF
Sbjct: 13  KYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 135 MGHANIWYSHPRQ 173
           M H N+W+SHPR+
Sbjct: 1   MAHENVWFSHPRK 13


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 148  IFGILTLGRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 270
            I G++ +  Y + S  CRSC NR    + Y     +  F+E
Sbjct: 1154 ICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 668 RGGXGGGFAXRXKXTPPPPXGEGAFLXFG 754
           RG  GGGF      +  PP G G F  FG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFG 211



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 671 GGXGGGFAXRXKXTPPPPXGEGAFLXFG 754
           GG  GGF       PP P G G F  FG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG 214


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 74  PSWKVXLICSSLARNNLIS*NGPRKYLVFSPSADTDKDPGHA 199
           P W   L+C   A  N++  +G  K L        DKD  +A
Sbjct: 111 PDWTYYLVCEFFAAGNVLLLDGHYKILSLLRVVTFDKDQVYA 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,875
Number of Sequences: 5004
Number of extensions: 34368
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)