Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B07
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    72   7e-13
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    29   3.7  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      29   3.7  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    29   6.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.5  
U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +1

Query: 172 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 291
           ++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGF
Sbjct: 13  KFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGF 52


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 183 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 284
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRI-QXSWT 305
           M I + + WL+P ++F+H+    Q +   H++ +  WT
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLEQLWT 138


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 171  QIRTRIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQXSWTKWS 314
            QIR R+   PI   +        F+    V+  VCS  ++   WT W+
Sbjct: 1225 QIRNRMCSEPIPSNRGAYCSGYSFDQRPCVMDNVCSDEKVDGGWTDWT 1272


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 171  QIRTRIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQXSWTKWS 314
            QIR R+   PI   +        F+    V+  VCS  ++   WT W+
Sbjct: 1225 QIRNRMCSEPIPSNRGAYCSGYSFDQRPCVMDNVCSDEKVDGGWTDWT 1272


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 140 PRKYLVFSPSADTDKDPGHADPAPTG 217
           P+KY V SP +D  + P ++ P+P+G
Sbjct: 354 PKKYPVASPPSDYAQKPSYSAPSPSG 379


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 171  QIRTRIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQXSWTKWS 314
            QIR R+   PI   +        F+    V+  VCS  ++   WT W+
Sbjct: 1225 QIRNRMCSEPIPSNRGAYCSGYSFDQRPCVMDNVCSDEKVDGGWTDWT 1272


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195 MPILLQQAWLNPQVRFEHMQTVLQRVCS*H-RIQXSWT 305
           + +L  Q W +P++RF+H+   LQ +   +  ++  WT
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNLTLGYSMVEKLWT 117


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
 Frame = -2

Query: 879 PPXXXXXPQTXPXGGXXKTPLXPPXETXXXGXXXXXEKXGXXPKXRXAPSPX-GGGGVXF 703
           PP     P   P G         P      G           P    +P P   GG    
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291

Query: 702 XRXANPPPXPP 670
            R  +PPP PP
Sbjct: 292 PRAGSPPPPPP 302


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
 Frame = -2

Query: 879 PPXXXXXPQTXPXGGXXKTPLXPPXETXXXGXXXXXEKXGXXPKXRXAPSPX-GGGGVXF 703
           PP     P   P G         P      G           P    +P P   GG    
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312

Query: 702 XRXANPPPXPP 670
            R  +PPP PP
Sbjct: 313 PRAGSPPPPPP 323


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
 Frame = -2

Query: 879 PPXXXXXPQTXPXGGXXKTPLXPPXETXXXGXXXXXEKXGXXPKXRXAPSPX-GGGGVXF 703
           PP     P   P G         P      G           P    +P P   GG    
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297

Query: 702 XRXANPPPXPP 670
            R  +PPP PP
Sbjct: 298 PRAGSPPPPPP 308


>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 338 LKVXFIIPTPFSPASLNPMS*AYSLKHCLHMFKPYLRIKPCLLEQDRHDRDPCPYLPRVR 159
           L + FI+PTP +P    P +    L H  H+F P+      L+  D     P P     R
Sbjct: 397 LPLRFILPTPAAPNPFLPSTRVGGLSH-NHLFIPHQPF-TTLVSTDSRYSAPNPL--SHR 452

Query: 158 IPN-ICVAH 135
           +PN IC  H
Sbjct: 453 LPNEICRVH 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,060
Number of Sequences: 27780
Number of extensions: 256115
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)