Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B06
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    31   0.18 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   6.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.9  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +1

Query: 175 EIKDIKDFLIKARRKDAQIRSK*RRTLKNVKF 270
           +I DIK FL  ARRKDA      + T K+VKF
Sbjct: 4   QISDIKQFLEIARRKDATSARIKKNTNKDVKF 35


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 628 GGXPPPPP 651
           GG PPPPP
Sbjct: 303 GGLPPPPP 310



 Score = 21.4 bits (43), Expect(2) = 6.7
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +1

Query: 637 PPPPPXXXIW 666
           PPPPP    W
Sbjct: 310 PPPPPSNDFW 319


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 587 GGXXQKXPPPKKXGEXPPXPP 525
           GG     PPP   G  PP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,574
Number of Sequences: 5004
Number of extensions: 32777
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)