Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B06
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    38   0.006
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    29   3.7  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +1

Query: 175 EIKDIKDFLIKARRKDAQIRSK*RRTLKNVKF 270
           EIK+IKDFL+KARRKDA+   K ++   N KF
Sbjct: 4   EIKEIKDFLVKARRKDAK-SVKIKKNSNNTKF 34


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -2

Query: 647 GGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPPGK 519
           G G  PP           +     +  PPPK  G  PP P G+
Sbjct: 133 GTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGE 175



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 647 GGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPP 525
           G G  PP           + G   ++ PPP K    PP PP
Sbjct: 70  GTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPP 110



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -2

Query: 647 GGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPPGK 519
           G G  PP           +     +  PPPK  G  PP P G+
Sbjct: 164 GTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGE 206



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -2

Query: 650 GGGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPPGK 519
           G G   PP     +     +     +  PPPK  G  PP P G+
Sbjct: 70  GTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGE 113



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -2

Query: 647 GGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPPGK 519
           G G  PP           +     +  PPPK  G  PP P G+
Sbjct: 102 GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGE 144



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -2

Query: 647 GGGGXPPXXXXXKXFFXXKXGGXXQKXPPPKKXGEXPPXPPGK 519
           G G  PP           +     +  PPPK  G  PP P G+
Sbjct: 39  GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGE 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,134
Number of Sequences: 27780
Number of extensions: 251765
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)