Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B01
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...   211   1e-55
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    76   6e-15
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    31   0.29 
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    30   0.51 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.7  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   6.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   8.4  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   8.4  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score =  211 bits (515), Expect = 1e-55
 Identities = 97/153 (63%), Positives = 121/153 (79%)
 Frame = +1

Query: 334 SL*IPGFKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGA 513
           SL  P    + P KG+P+VIM VGLQGSGKTTTC+KLA HY R+  KSCLV ADTFRAGA
Sbjct: 85  SLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGA 144

Query: 514 YDQVKQNCTKARIPFYGSYTEVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESLFEE 693
           +DQ+KQN  KAR+P++GSYTE DPVVIA  GVD FK   F++IIVDTSGRH+QE+ LF E
Sbjct: 145 FDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAE 204

Query: 694 MLAVATAIKPDNIIFVMDATIGQACEAQARASK 792
           M+ ++ AI+PD  I ++DA+IGQA E+Q++A K
Sbjct: 205 MVEISDAIRPDQTIMILDASIGQAAESQSKAFK 237



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 21/40 (52%), Positives = 32/40 (80%)
 Frame = +2

Query: 98  GRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNI 217
           GR++ +AL   S+AT +NEE+++++LK IC ALLE DVN+
Sbjct: 7   GRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNV 46



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +3

Query: 222 LXKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGV 353
           L + LR N++  I+   +  G+N +R++Q AVF EL  LVDP V
Sbjct: 48  LVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKV 91



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 771 SSSQGFKDKVDIGSVIITKLDGHXXXXXXXXXXXXTQSPIIF 896
           S S+ FK+  D G+VIITKLDGH            T++PI+F
Sbjct: 231 SQSKAFKETADFGAVIITKLDGHAKGGGALSAVAATKTPIVF 272


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
 Frame = +1

Query: 373 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQ----VK--QN 534
           + +P  I  +G+ G GK+TT  K+AY  L  N++  +   DTFR+GA +Q    VK  Q+
Sbjct: 339 ENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQS 398

Query: 535 CTKARIPFYGSYTEVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESLFEEMLAVATA 714
              + I  +      D   +    V+  K+  F++I++DT+GR   ++ L   +     A
Sbjct: 399 LKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKA 458

Query: 715 IKPDNIIFVMDATIGQACEAQAR 783
            K D I  V +A +G    AQA+
Sbjct: 459 TKLDKIFQVAEALVGTDSLAQAK 481


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 379 KPNVIMFVGLQGSGKTTTCTKLAYHYLRKN 468
           KP  I+ VG+ GSGKTT   +L  H   KN
Sbjct: 7   KPCAIIVVGMAGSGKTTFMQQLNAHLHSKN 36


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 373 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVK 528
           +G+P ++   G QGSGK+T  + L     RKN        D F     +QV+
Sbjct: 22  EGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVE 73


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 394  MFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYT 573
            + +G+ G+GKTTT + L    L K  K  L+ + T  A     +K     + I   GS  
Sbjct: 952  LILGMPGTGKTTTISSLIRSLLAKK-KKILLTSFTHLAVDNILIKLKGCDSTIVRLGSPH 1010

Query: 574  EVDPVV 591
            ++ P+V
Sbjct: 1011 KIHPLV 1016


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 388 VIMFVGLQGSGKTTTCTK-LAYHYLRKNWKSCLVCADTFRAGAYDQVKQ 531
           +I+FVG  GSGKTT   + + Y  L     + + C    R  A    K+
Sbjct: 93  IIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKR 141


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 653 VSTIIISKPCFLNISTP-VVAITTG 582
           +S ++++ PC L +STP  V + TG
Sbjct: 478 ISVVVVACPCALGLSTPTAVMVGTG 502


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 360 IPARQREA*CNNVCGITRIWKDHNM 434
           I  R++   C N+C +++++ DH M
Sbjct: 256 IDGRKQRTWCRNICLLSKLFLDHKM 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,559
Number of Sequences: 5004
Number of extensions: 69121
Number of successful extensions: 213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)