Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_B01
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...   250   8e-67
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...   250   8e-67
Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical ...    33   0.21 
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    31   1.5  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    30   2.0  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    30   2.0  
Z99710-11|CAB82211.1|  342|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z99709-14|CAB76414.1|  342|Caenorhabditis elegans Hypothetical p...    29   4.5  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    29   6.0  
Z67755-3|CAA91756.1|  189|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score =  250 bits (613), Expect = 8e-67
 Identities = 110/147 (74%), Positives = 129/147 (87%)
 Frame = +1

Query: 346 PGFKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQV 525
           PG  P+ P KG+ NV MFVGLQGSGKTTTCTK+AY+Y RK WK+CL+CADTFRAGA+DQ+
Sbjct: 89  PGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQL 148

Query: 526 KQNCTKARIPFYGSYTEVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESLFEEMLAV 705
           KQN TKARIPFYGSY+E+DPV IA  GV+ F ++GFE+IIVDTSGRHKQE SLFEEML V
Sbjct: 149 KQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQV 208

Query: 706 ATAIKPDNIIFVMDATIGQACEAQARA 786
           + A+ PDN++FVMDA+IGQACEAQARA
Sbjct: 209 SNAVTPDNVVFVMDASIGQACEAQARA 235



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +3

Query: 222 LXKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGV 353
           L K L++NV+  I+F+E+ GG NKRR IQ  VF EL+KLVDPGV
Sbjct: 48  LVKQLKDNVKKAINFEEIVGGANKRRYIQKTVFNELLKLVDPGV 91



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +2

Query: 98  GRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNI 217
           GRKI  A+  L ++T+INE  L+ MLK++C AL+E+DV+I
Sbjct: 7   GRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHI 46



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 771 SSSQGFKDKVDIGSVIITKLDGHXXXXXXXXXXXXTQSPIIF 896
           + ++ F   VD+ SVIITKLD H            T+SP+IF
Sbjct: 231 AQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIF 272


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score =  250 bits (613), Expect = 8e-67
 Identities = 110/147 (74%), Positives = 129/147 (87%)
 Frame = +1

Query: 346 PGFKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQV 525
           PG  P+ P KG+ NV MFVGLQGSGKTTTCTK+AY+Y RK WK+CL+CADTFRAGA+DQ+
Sbjct: 89  PGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQL 148

Query: 526 KQNCTKARIPFYGSYTEVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESLFEEMLAV 705
           KQN TKARIPFYGSY+E+DPV IA  GV+ F ++GFE+IIVDTSGRHKQE SLFEEML V
Sbjct: 149 KQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQV 208

Query: 706 ATAIKPDNIIFVMDATIGQACEAQARA 786
           + A+ PDN++FVMDA+IGQACEAQARA
Sbjct: 209 SNAVTPDNVVFVMDASIGQACEAQARA 235



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +3

Query: 222 LXKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGV 353
           L K L++NV+  I+F+E+ GG NKRR IQ  VF EL+KLVDPGV
Sbjct: 48  LVKQLKDNVKKAINFEEIVGGANKRRYIQKTVFNELLKLVDPGV 91



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +2

Query: 98  GRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNI 217
           GRKI  A+  L ++T+INE  L+ MLK++C AL+E+DV+I
Sbjct: 7   GRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHI 46



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 771 SSSQGFKDKVDIGSVIITKLDGHXXXXXXXXXXXXTQSPIIF 896
           + ++ F   VD+ SVIITKLD H            T+SP+IF
Sbjct: 231 AQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIF 272


>Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 482 WYVLTHSELVLMIKSNRIVLKPEFRFMEATQRWIQ 586
           W  L   +++ ++K N + +  EF+  EA Q+WIQ
Sbjct: 192 WQELHRDQMIEILKCNNLKVASEFKLWEALQKWIQ 226


>AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 482 WYVLTHSELVLMIKSNRIVLKPEFRFMEATQRWIQ 586
           W  L   +++ ++K N + +  EF+  EA Q+WIQ
Sbjct: 192 WQELHRDQMIEILKCNNLKVASEFKLWEALQKWIQ 226


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 376 GKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLV 486
           G+P VI+F G+ G GK+T   K+ + +L +N    L+
Sbjct: 410 GRPYVIVFCGVNGVGKSTNLAKITF-WLTENKHRVLI 445


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 711 CSNCQHLFKKRLFLLMTTTSIHNNHFKTLLLEHIHSSCCYY 589
           C+ CQH  + + FL +   + H N  +    E+  S+ C+Y
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFY 138


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 711 CSNCQHLFKKRLFLLMTTTSIHNNHFKTLLLEHIHSSCCYY 589
           C+ CQH  + + FL +   + H N  +    E+  S+ C+Y
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFY 138


>Z99710-11|CAB82211.1|  342|Caenorhabditis elegans Hypothetical
           protein F08A8.7 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 574 EVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESL 684
           E DP     TG   +K  GFE +I  T  R K E+ L
Sbjct: 305 EFDPTFAGKTGTINYKANGFEYVIEVTEERVKIEKKL 341


>Z99709-14|CAB76414.1|  342|Caenorhabditis elegans Hypothetical
           protein F08A8.7 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 574 EVDPVVIATTGVDMFKKQGFEMIIVDTSGRHKQEESL 684
           E DP     TG   +K  GFE +I  T  R K E+ L
Sbjct: 305 EFDPTFAGKTGTINYKANGFEYVIEVTEERVKIEKKL 341


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 177 FSIEFNTSSFIIVALLNDCKAVVILRPKSC*K 82
           FS+ FN   F++ A+LN  +   IL P SC K
Sbjct: 108 FSLFFNNMQFLLAAVLNIHRISSILFPMSCEK 139


>Z67755-3|CAA91756.1|  189|Caenorhabditis elegans Hypothetical
           protein F54F7.3 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 29/97 (29%), Positives = 42/97 (43%)
 Frame = -3

Query: 783 PGLSFTSLTNCCIHHKNYVVWFNSCSNCQHLFKKRLFLLMTTTSIHNNHFKTLLLEHIHS 604
           P  S  S  + CI H      F +C +  H   K++       S + N   TL LE  HS
Sbjct: 31  PANSVDSNKSLCITHLKI---FETCIDGLHNAYKKINE-EDLISGNINKTITLKLELYHS 86

Query: 603 SCCYYYWIHLCVASIKRNSGFSTILFDLIISTSSECV 493
           SC + Y + L  A  +    F T++ D I   S +C+
Sbjct: 87  SC-FKYALCLNSAVNQTIQNFVTVMDDNIDQISDDCI 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,923,444
Number of Sequences: 27780
Number of extensions: 387638
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)