Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_A24
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 293  QQSCQLCDHQRFQTLRCNRASSSLLKT 213
            QQS Q    Q+ QT+  N+A  S+L+T
Sbjct: 976  QQSQQSQQQQQQQTIVTNQAGKSILQT 1002


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -3

Query: 283 ASSVIINDFKLSDVTVLHHH 224
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 323 HTCLVCL*XXQQSCQLCDHQRFQT 252
           H C VC     QS QL  H R  T
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHT 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,491
Number of Sequences: 438
Number of extensions: 2361
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)