Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_A07
         (1026 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.037
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 21/76 (27%), Positives = 27/76 (35%)
 Frame = +1

Query: 694 PXXPEGXXAXGXRAPLXGXWXPPXTXAHAXXPAGRXXAPXSPLPPAGRXFXRXRRPPXXP 873
           P  P+        AP      PP   +    P+     P S LPP  +     + PP  P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS-LPPPAQPAAPVKSPPSAP 188

Query: 874 SGXXPXPAXPXRXPPP 921
           S     P  P + PPP
Sbjct: 189 SLPSAVPPMPPKVPPP 204


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -2

Query: 263 SFRVXRPPXSDXXXLRGTXXXSPSETXXXHHPRTXSPDKSSXLXFVXGRVSGTCAXGSLR 84
           +F V  PP S    L G     P E+    +PR  SP       F   + S   A G +R
Sbjct: 356 AFDVESPPSSYATPLTGIRMPQP-ESDLYSYPREVSPSSGGYRMFGHSKPSSYKASGPVR 414

Query: 83  P 81
           P
Sbjct: 415 P 415


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 22/66 (33%), Positives = 23/66 (34%)
 Frame = +1

Query: 724  GXRAPLXGXWXPPXTXAHAXXPAGRXXAPXSPLPPAGRXFXRXRRPPXXPSGXXPXPAXP 903
            G  AP      PP     A  P  +  AP  P PP          PP  P    P PA P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPP--QMSAPTPPPPPMSV-------PP--PPSAPPMPAGP 1727

Query: 904  XRXPPP 921
               PPP
Sbjct: 1728 PSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 423  GAPRIPXRPXXXGXSVPAFEAPARTPPVKXDSSV 524
            GAP  P         +P+  AP+  PPV   S +
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,782
Number of Sequences: 5004
Number of extensions: 22207
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)