Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_A02
(911 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 173 6e-43
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 173 7e-43
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 173 7e-43
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 173 7e-43
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 173 7e-43
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 173 7e-43
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 173 7e-43
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 173 7e-43
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 64 9e-10
L34357-1|AAA58496.1| 442|Homo sapiens GATA-4 protein. 31 7.7
D78260-1|BAA11334.1| 439|Homo sapiens GATA-4 transcription fact... 31 7.7
BC105108-1|AAI05109.1| 442|Homo sapiens GATA binding protein 4 ... 31 7.7
BC101580-1|AAI01581.1| 442|Homo sapiens GATA binding protein 4 ... 31 7.7
AY740706-1|AAW51922.1| 442|Homo sapiens GATA binding protein 4 ... 31 7.7
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (422), Expect = 6e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 37 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 96
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 97 GVIVNNKGEMKGSAITGPVAKECADLWPR 125
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 4 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 38
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (421), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 386
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 387 GVIVNNKGEMKGSAITGPVAKECADLWPR 473
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 63.7 bits (148), Expect = 9e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +3
Query: 207 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 305
K IKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Score = 39.5 bits (88), Expect = 0.017
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 104 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 211
+GAKFRISLG P + A T GAKNLY+I+V+G
Sbjct: 10 SGAKFRISLGLPVGAVINCADNT-GAKNLYIISVKG 44
>L34357-1|AAA58496.1| 442|Homo sapiens GATA-4 protein.
Length = 442
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 245 GRRQSVQATFDXLGLRSHTDSLHPVLSAQLITAPXWEXP 129
G SV TF + H S+HPVLSA ++ + P
Sbjct: 375 GHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASP 413
>D78260-1|BAA11334.1| 439|Homo sapiens GATA-4 transcription factor
protein.
Length = 439
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 245 GRRQSVQATFDXLGLRSHTDSLHPVLSAQLITAPXWEXP 129
G SV TF + H S+HPVLSA ++ + P
Sbjct: 372 GHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASP 410
>BC105108-1|AAI05109.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 245 GRRQSVQATFDXLGLRSHTDSLHPVLSAQLITAPXWEXP 129
G SV TF + H S+HPVLSA ++ + P
Sbjct: 375 GHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASP 413
>BC101580-1|AAI01581.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 245 GRRQSVQATFDXLGLRSHTDSLHPVLSAQLITAPXWEXP 129
G SV TF + H S+HPVLSA ++ + P
Sbjct: 375 GHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASP 413
>AY740706-1|AAW51922.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 245 GRRQSVQATFDXLGLRSHTDSLHPVLSAQLITAPXWEXP 129
G SV TF + H S+HPVLSA ++ + P
Sbjct: 375 GHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASP 413
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,987,166
Number of Sequences: 237096
Number of extensions: 2099524
Number of successful extensions: 3438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3427
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -