Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_A01
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 628 THLRGIRTPPRHPASGLGRSRSHRLPHEDLTER 726
           THL  + +PP H    + +S  H   H+ L ++
Sbjct: 53  THLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQ 85



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 701 YLMKISPSAATRSLXPPXGKIVRDIK 778
           YLM  +P    R    P GKI+R+++
Sbjct: 88  YLMYENPDEEKRYQEHPNGKILRELQ 113


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 419  LRVAPEEHPVLLTEAPLNPKANREKM 496
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 617 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIS-PSAATR 736
           +H +  Y GY  P   +  D A  + T+  MK+   SA TR
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKLGWKSARTR 227


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
 Frame = +1

Query: 649 TP-PRHPASGLGRSRSHRLPH 708
           TP P H   G G S  H  PH
Sbjct: 411 TPGPHHHTMGHGHSHIHATPH 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,942
Number of Sequences: 438
Number of extensions: 5534
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)