Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P23
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.31 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   3.8  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   5.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   6.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.8  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 706  IGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 566
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 272 RYHSLCQFYNIHHQ--CLVGSHLG 207
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 349
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 122 VQYQNRAP*SQKMWMPVFVEK-QKKILSFFQDVSQLNTDDEYYKIG 256
           V+ +N+   ++ M M  FV++ ++++ +F  D S++  D+E  K+G
Sbjct: 267 VESENKGLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVG 312


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 731 YCINGR*NNWLCKRSSRFPCECH 663
           YCI+G  ++W+C  +  F C  H
Sbjct: 265 YCISGS-SDWVCVSTQHFHCNIH 286


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 620 KMQHGLINPEAAAKYGIHKENDYFVYKANYSNARLYNNEEQRLTYF 757
           ++ H L   +   K    K ND F++ +  +N    N+++ +L YF
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNK--LNDDQSKLWYF 571


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 648  KPQLSMAFTRKTTTSFTKPIILTPVYTIMKN 740
            +P +   F  K T   TKPI++  ++ IMK+
Sbjct: 956  QPIIFQKFKEKLTHKGTKPIVVLNIFQIMKS 986


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 289
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,080
Number of Sequences: 5004
Number of extensions: 68414
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)