Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P22
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    92   1e-19
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    85   1e-17
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   2.2  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   8.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +2

Query: 107 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 283
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 284 LPPGL 298
           LPP L
Sbjct: 61  LPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 85.4 bits (202), Expect = 1e-17
 Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +2

Query: 107 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 283
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 284 LPPGL 298
           LPP L
Sbjct: 61  LPPAL 65


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 167 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQ 301
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQ 247


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 92  YSFFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEK 271
           Y F      +K  + FL +   KD    K+KKN  ++   +    FL  L   D  K +K
Sbjct: 15  YHFLQENGYVKTAQTFLKETGDKDLAKGKVKKNLLDL---LSQKEFLPYLTTEDVGKHKK 71

Query: 272 LKQSL 286
            K+SL
Sbjct: 72  TKESL 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,518
Number of Sequences: 5004
Number of extensions: 39922
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)