Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_P19
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.51
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.51
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.90
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.90
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.90
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.6
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.4
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.4
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPR----GXXLSXPLPVSRKPGPPFPPSG 936
P P + P PP PPR G + P P SR PP PPSG
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR---PPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPR----GXXLSXPLPVSRKPGPPFPPSG 936
P P + P PP PPR G + P P SR PP PPSG
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR---PPAPPSG 387
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 805 GGXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
GG P P +P PP PPRG + LP + G P PP+G
Sbjct: 286 GGSPPPPRAGSP---PPPPPPRGSPPTGSLPPPQAGGSP-PPAG 325
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXL-SXPLPVSRKPGPPFPPSG 936
G P P +P P G PP S P P + P PP PP G
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 805 GGXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
GG P P +P PP PPRG + LP + G P PP+G
Sbjct: 307 GGSPPPPRAGSP---PPPPPPRGSPPTGSLPPPQAGGSP-PPAG 346
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXL-SXPLPVSRKPGPPFPPSG 936
G P P +P P G PP S P P + P PP PP G
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 805 GGXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
GG P P +P PP PPRG + LP + G P PP+G
Sbjct: 292 GGSPPPPRAGSP---PPPPPPRGSPPTGSLPPPQAGGSP-PPAG 331
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXL-SXPLPVSRKPGPPFPPSG 936
G P P +P P G PP S P P + P PP PP G
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 311
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 449 GGP-PGPF-NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG 489
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 194 GGP-PGPF-NPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSG 234
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 254 GGP-PGPF-NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSG 294
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 344 GGP-PGPF-NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSG 384
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 404 GGP-PGPF-NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 444
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 419 GGP-PGPF-NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 459
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 434 GGP-PGPF-NPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 474
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 224 GGP-PGPF-NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSG 264
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 314 GGP-PGPF-NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSG 354
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F NP PP P G P S P PF PSG
Sbjct: 464 GGP-PGPF-NPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSG 504
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F P PP P G P S P PF PSG
Sbjct: 179 GGP-PGPF-GPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSG 219
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 239 GGP-PGPF-DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG 279
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 329 GGP-PGPF-DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG 369
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 479 GGP-PGPF-DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG 519
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 269 GGP-PGPF-DPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSG 309
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 359 GGP-PGPF-DPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSG 399
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 808 GXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
G P PG F +P PP P G P S P PF PSG
Sbjct: 389 GGP-PGPF-DPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 429
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPS 933
P P P PPG P R P R PGPP PP+
Sbjct: 238 PSPSDPPGPPG-PPGPPTRRPPGPPGPPTRRPPGPPGPPT 276
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPS 933
P PG P PP P P R PGPP PP+
Sbjct: 227 PSPGPVDPSDEPSPSDPPGPPGPPGP-PTRRPPGPPGPPT 265
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 802 GGGXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
GG P P F PP PP + P P+ P PP PPSG
Sbjct: 81 GGIPPPPPMFAG--GIPP-PPPMMGGIPPPPPMFGAPPPPPPPSG 122
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
P PG PP PP G P P+S P PP PP G
Sbjct: 730 PPPGGLPPITGGPPPPPPPG---GLP-PISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
P PG PP PP G P P+S P PP PP G
Sbjct: 730 PPPGGLPPITGGPPPPPPPG---GLP-PISGGPPPPPPPPG 766
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 805 GGXPXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPS 933
GG P P PP R P+PVSR GPP P+
Sbjct: 101 GGPPVPPSRSGMIPVPPS---RSGGPPAPMPVSRAGGPPRAPT 140
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 814 PXPGXFKNPXXFPPGXPPRGXXLSXPLPVSRKPGPPFPPSG 936
P PG PP PP G P P+S P PP PP G
Sbjct: 313 PPPGGLPPITGGPPPPPPPG---GLP-PISGGPPPPPPPPG 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,335
Number of Sequences: 27780
Number of extensions: 212419
Number of successful extensions: 605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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