Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P15
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138...    31   0.97 
08_01_0628 - 5460030-5462960                                           29   5.2  
01_01_1008 - 7987936-7988628,7988923-7989102                           29   5.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     28   9.0  
01_05_0783 + 25183361-25185628                                         28   9.0  

>04_03_0934 -
           20912932-20912997,20913131-20913172,20913477-20913845,
           20913949-20914080
          Length = 202

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 774 PTLPXREKGGTGIR*PXGSEQEGARGXFPGGNA 676
           P LP  + GG G      SE+   RG  PGGNA
Sbjct: 82  PPLPGSDDGGGGDMPTLPSERRSPRGALPGGNA 114


>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = -3

Query: 716 NRRXHEGGFQGETPGIFIVXSGFATXXLSVDFCDARQGGGAYGKTPATRPF--YGSWPFA 543
           +R  HE GF         + S      L++D C + +   +  K  A R F  +GS    
Sbjct: 550 HRSKHEEGFVQFAECDLTMDSNIRVRHLALDRCTSSRRSASAAKIAALRSFQAFGS-KLD 608

Query: 542 GLLLTCFFLRYPLILWITVLPPLSELI 462
             L++CF L   L LW   +  L   +
Sbjct: 609 ASLMSCFRLLTVLNLWFIEINKLPSTV 635


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 749 GGQVSGNRQXRNRRXHEGGFQGETPG 672
           GG+V+G    R+RR   G ++GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 408 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EKTCEQKASKRPGTV 563
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_05_0783 + 25183361-25185628
          Length = 755

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 581 PATRPFYGSWPFAGLLLTCFFLRYPLILW 495
           PAT   Y SW   G++   F  RY  + W
Sbjct: 661 PATAVNYNSWLIIGIIFNFFVFRYRKLWW 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,510
Number of Sequences: 37544
Number of extensions: 393250
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)