Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_P11
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 2.2
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 2.2
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 3.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 6.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 6.6
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 6.6
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 8.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 8.7
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 393 CALNFFPETQKLQSLHS*DTNSFLMRSYKLARLL 292
C + +FP+ S HS D +F R Y L R L
Sbjct: 21 CFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTL 54
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Frame = +2
Query: 287 SCNNRASLYDRIKKLLVSYE-----WSDCNFCVSGKKFKAHKLILGISSPVFEAMLY--- 442
S N L++ +L SYE +SD F +HK IL S +L
Sbjct: 593 SSNEMQLLFEGSIPILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKLLLQKK 652
Query: 443 -GPLSN----------NNDIHIPDIEPEIFQLILNYIYTDNV 535
+SN ++ I + DI P ++L+Y+YTD +
Sbjct: 653 KSSVSNIIYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTL 694
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 362 FCVSGKKFKAHKLILGISSPVFEAMLYGPLS-NNNDIHIPD--IEPEIFQLILNYIYTDN 532
F SG F K+ GI P+FE + G NN ++I +EP+ L Y+++D
Sbjct: 306 FLFSGTVFMRVKV--GI--PLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDE 361
Query: 533 VDI 541
V +
Sbjct: 362 VSV 364
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 491 EIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENVTIDN 652
+IFQ LN+I T N ++ S+ D + Y+L+ + + +KEN T+ N
Sbjct: 59 DIFQDFLNFIITKNQEMFSM----DCNSICKSYVLKVAEEKIEKLLKENGTLKN 108
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 515 YIYTDNVDITSIEQAFDLLYASRKY 589
Y+ +VD+T I ++LLY S Y
Sbjct: 1449 YLQRQHVDVTDIPMYYELLYPSTDY 1473
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 569 LYASRKYLLEHLTKTCIEYIKENVTIDNVIEVLNYPDYMHDKQLTTYAVN 718
++ +KY + K+C + IK+++ V + L P+++ K T +A +
Sbjct: 579 MFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYATIHATS 628
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 716 NLFCAHAYYLFQRHIQVISPLC-LKTVLQSDEINI 817
++FC H + Q+ PLC K V+++D NI
Sbjct: 377 HVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNI 411
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 473 IPDIEPEIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENV 640
+PD+ +L+ + T++ +T+ + YA ++YL E+ T T YIK ++
Sbjct: 1032 MPDVNYWYADTMLHAVNTEDF-VTTDGDIWSATYAIKRYLGENPTDTFAYYIKASL 1086
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 272 LKNENSCNNRASLYDRIKKLLVSYEWSDCNFC 367
+K EN CNN + L++ I++ +S N C
Sbjct: 1048 IKQENLCNNGSLLFEAIEQNSLSKVMIPLNIC 1079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,350
Number of Sequences: 5004
Number of extensions: 79492
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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