Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_P09
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 304 5e-83
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 304 5e-83
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 113 2e-25
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.5
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 304 bits (747), Expect = 5e-83
Identities = 138/246 (56%), Positives = 176/246 (71%), Gaps = 1/246 (0%)
Frame = +1
Query: 142 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 321
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 322 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 498
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 499 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 678
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 679 LXADWDFLPPKKIKDPEAKKPEDWDDKPTIPDPENNKX*XLGQA*THSXSXCPQPXNWDD 858
L DWD LP KKIKDP+AKKPEDWD++ I D E+ K + +P +WDD
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250
Query: 859 XMDGKW 876
MDG+W
Sbjct: 251 EMDGEW 256
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 304 bits (747), Expect = 5e-83
Identities = 138/246 (56%), Positives = 176/246 (71%), Gaps = 1/246 (0%)
Frame = +1
Query: 142 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 321
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 322 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 498
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 499 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 678
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 679 LXADWDFLPPKKIKDPEAKKPEDWDDKPTIPDPENNKX*XLGQA*THSXSXCPQPXNWDD 858
L DWD LP KKIKDP+AKKPEDWD++ I D E+ K + +P +WDD
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDD 250
Query: 859 XMDGKW 876
MDG+W
Sbjct: 251 EMDGEW 256
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 113 bits (272), Expect = 2e-25
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Frame = +1
Query: 274 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQ 450
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ E+
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 451 K--DMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 594
+ +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 595 YTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD--FLPPKKIKDPEAKKPEDWDDKPTI 768
THL+TL+VKP Y V +D + + G++ +D PPK+I D KP DWD++ I
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENI 285
Query: 769 PDP---------ENNKX*XLGQA*TH------------SXSXCPQPXNWDDXMDGKW 876
D EN + +A T + +P +WD+ MDG W
Sbjct: 286 EDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSW 342
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 687
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 550 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 687
K I+K++ C+D THL L D+TY V ++ NE+V++ A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,673,240
Number of Sequences: 27780
Number of extensions: 505984
Number of successful extensions: 1616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -