Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P07
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    29   4.6  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    29   4.6  
AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    29   4.6  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   8.0  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    28   8.0  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    28   8.0  

>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 831 APYYQSSTRTVSGSXNSNNKHLG 763
           APY Q  T  VSG+ +S  +HLG
Sbjct: 4   APYQQKKTSFVSGASDSEEEHLG 26


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 831 APYYQSSTRTVSGSXNSNNKHLG 763
           APY Q  T  VSG+ +S  +HLG
Sbjct: 4   APYQQKKTSFVSGASDSEEEHLG 26


>AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical
           protein Y116A8A.7 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 100 LIALALSSTVPEFKTTPVDAAFVEKQKKIL 189
           L++L   +T+PE+++ P  A   E  KKI+
Sbjct: 30  LVSLTKRNTIPEYQSVPPGAVITEPAKKII 59


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 831 APYYQSSTRTVSGSXNSNNKHLG 763
           APY Q  T  VSG+ +S  +HLG
Sbjct: 4   APYQQKKTSFVSGASDSEEEHLG 26


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  PASXRESLKXLTIRFYGSDHEDCPDFXRCLLPSLSVAP 127
           P +  +S +  TIR + +D ++ P F    LP L+V P
Sbjct: 397 PINGLQSTRTQTIRIHVADIDEPPSFVNSPLPMLAVVP 434


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  PASXRESLKXLTIRFYGSDHEDCPDFXRCLLPSLSVAP 127
           P +  +S +  TIR + +D ++ P F    LP L+V P
Sbjct: 397 PINGLQSTRTQTIRIHVADIDEPPSFVNSPLPMLAVVP 434


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 282 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 142
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 426 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 289
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 426 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 289
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 282 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 142
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  PASXRESLKXLTIRFYGSDHEDCPDFXRCLLPSLSVAP 127
           P +  +S +  TIR + +D ++ P F    LP L+V P
Sbjct: 397 PINGLQSTRTQTIRIHVADIDEPPSFVNSPLPMLAVVP 434


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 14  PASXRESLKXLTIRFYGSDHEDCPDFXRCLLPSLSVAP 127
           P +  +S +  TIR + +D ++ P F    LP L+V P
Sbjct: 397 PINGLQSTRTQTIRIHVADIDEPPSFVNSPLPMLAVVP 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,591
Number of Sequences: 27780
Number of extensions: 379771
Number of successful extensions: 1145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)