Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P06
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...   134   2e-32
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   8.6  

>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score =  134 bits (323), Expect = 2e-32
 Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
 Frame = +2

Query: 272 NCWGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSYYFY 451
           NCWG+  VSK + ER +A+   L K +++IV LQEVWS  D+  ++  +   L YS +F+
Sbjct: 15  NCWGLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLVYSRFFH 74

Query: 452 SGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKF-GERLINVY 628
           S  +G+GL +FSK+ I +   +++PLNG       GDW+ GKGV    ++    R+I+++
Sbjct: 75  SAAMGAGLAMFSKFPIIESSMNKYPLNGRPQAFWRGDWYVGKGVATASLQHPSGRIISLF 134

Query: 629 CTHLHAEYHED-DMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKIIS 802
            THLHA Y +  D YL HR+ QA+  ++ ++       + I AGD N  P  + ++II+
Sbjct: 135 NTHLHAPYGKGADTYLCHRLSQAWYISKLLRAAVQRGHIVIAAGDFNIQPLSVPHEIIT 193


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 358 YSMFARSL---E*KRLPIFKGEPKECTPIFLLLLQWSSRFRSLCIF*MGNPRCLLPSVAL 528
           + +F  SL   E  R+P  + +P +CTP+FL +   S R    CI        LL ++  
Sbjct: 59  HHLFVMSLITREYMRMPALRLKPSQCTPLFLAVYT-SLRDAYACIHTHSQEAILLSTLFA 117

Query: 529 EWVHTQNTSW 558
           +  H   T +
Sbjct: 118 DSDHFSATGF 127


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -1

Query: 407 LNIGNLFHSKLLANILYYVRFLISM*I*LHIFLSYS*TPLVYPNSFKVKILSVNSISVSN 228
           +N   L+H  +L++ L+++  LIS       FLS+     +    F +  LS NS S+++
Sbjct: 155 INFFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPCFSL-FLSSNSFSLAS 213


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 540 YTKYIMVTGLEEKVWVSVGSSLGRDSSMSIAHIFT 644
           + KY M+TG+  +V +S+G ++G     +I  I T
Sbjct: 433 HPKYHMITGVVVQVGISIGETVGSICGGAIFDITT 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,779,034
Number of Sequences: 5004
Number of extensions: 85612
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)