Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P04
         (1092 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   5.8  

>U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical
           protein R105.1 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 PFGPWQSASWAPKGSRIGCXTPK 316
           P+G W+S  W PKGS I   T K
Sbjct: 374 PYGYWRSIQWCPKGSVIIGITEK 396


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 859 PPPXXKKKXXGGGXXPPPXXFFXKKKGGGXFXP 957
           PPP   +   GG   PPP  F  +  GG  F P
Sbjct: 782 PPPPSFRGGRGGHGGPPPPHFDRRGGGGPPFRP 814


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,930
Number of Sequences: 27780
Number of extensions: 254765
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2939888878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)