Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P03
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    31   0.97 
03_06_0149 - 31987183-31987630,31987813-31987874                       31   1.7  
12_02_0634 + 21416205-21416954                                         29   3.9  
05_04_0142 - 18372751-18373338                                         29   6.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.8  

>11_01_0419 +
           3226224-3226756,3228010-3228169,3228256-3228435,
           3228525-3228659,3229262-3229344,3229442-3229535,
           3229649-3229735
          Length = 423

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 707 ASRREKGGQVSGKRQGRNRRAHEGASRGKRPGIFIVLS 594
           A+    GG+    RQGR RR      RG RP +F+VL+
Sbjct: 93  AAEAADGGR-RRSRQGRRRRPQRRRRRGSRPSLFMVLA 129


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 725 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRP 615
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 26/72 (36%), Positives = 30/72 (41%)
 Frame = -1

Query: 743 RYLPA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRPGIFIVLSGFATSDLSVD 564
           R  PA   R R   RR  GG  +G+R+GR   A     R  R        G   S     
Sbjct: 111 RRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADR--------GRGGS----- 157

Query: 563 FCDARQGGGAYG 528
            CDA +GGGA G
Sbjct: 158 -CDAGRGGGAAG 168


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 713 RHASRREKGGQVSGKRQGRNRRAHEGASRGKRP 615
           R     E+GG   G++QGR R+A   A R + P
Sbjct: 59  RRVEEEEQGGGGGGRKQGRRRKAVARAIRERLP 91


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,751,029
Number of Sequences: 37544
Number of extensions: 528808
Number of successful extensions: 1558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)