Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_P03
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    31   1.5  
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    29   6.1  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    28   8.1  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 637 PSCALLFRPCR--LPDTCPPFSLREAWRFLIAHAGRYLSS 750
           P+ A LF P     P   PP+  R  WRF  A++G +LSS
Sbjct: 484 PNDAPLFCPTNGSSPWEMPPYKTRAVWRFGDANSGAFLSS 523


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 438 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYK 608
           +  GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 609 DTRAFPPGS 635
            T A  PG+
Sbjct: 77  GTNAGVPGA 85


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 438 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYK 608
           +  GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 609 DTRAFPPG 632
            T A  PG
Sbjct: 77  GTNAGVPG 84


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 527 FHRLRPPDEHHKNRRSSQRW-RNPTGL*RYQGVSPWKLPRALSCSDPA 667
           F+ + PP+ H++ R  +Q +  N T    Y+   PW  PR  + +DPA
Sbjct: 7   FNPISPPNNHYRPRSPTQSYSSNAT---NYE--QPWNSPRFRAPADPA 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,764
Number of Sequences: 27780
Number of extensions: 398904
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)