Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O23
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   1.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.3  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   6.3  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = -1

Query: 326 SSLDCAPAPDSYKESSSITPRGDAITFLSSARL*DSLRIFKEVLSMASPSLVLENS*PNM 147
           SSL  + A  S   SSS T    A + ++S+ L  S      + S ++ S  L +S  N 
Sbjct: 107 SSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNS 166

Query: 146 *NACVPHTNVTNNSSLSMTVA 84
             +  P ++ T +SSLS T A
Sbjct: 167 TTSATPTSSAT-SSSLSSTAA 186


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 562 LGGRTDSRTHKDSCQRRQN*PRHGRC 639
           L G+T  + H +SC  R++  RHG C
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHGIC 74


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 471 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 626
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 503 SEVDNINFSAPKNAADIINRWADEQTQG-HIKTPVSEDKIDPATAVAMFN 649
           + + NINF AP+   +I++   +EQ     +K   SE   +P   VA+ N
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEK--NPTRIVALEN 625


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 40  LRFWVSFCSSGISRSATVMDKLLLLVTLVCGTQAFYMFGH-EFSRTRLGDAIDKTSLKIL 216
           LR WVSF  S +  S    DK L   TL    Q + M+   E        AI K  L +L
Sbjct: 320 LRAWVSFLGSALRESDRNFDKELFYTTL---KQLYTMYQQTELVGIDRPMAILKDMLVLL 376

Query: 217 KESYNLADDKNV 252
             S  L+ DK V
Sbjct: 377 DISKKLSLDKIV 388


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 425 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 568
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,549
Number of Sequences: 5004
Number of extensions: 62878
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)