Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O20
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    27   2.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   3.7  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   6.5  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 229 TTLSLGTGKWGEGRSSGLWERATKDFLVKVVTTGSSSMMTAAN*PDRLTAPEY*DLE 399
           T + +G G +G   +  L +  + D ++ +      S M+AAN  +++  PEY DL+
Sbjct: 4   TIVIVGCGVFGLSTAVELAKNHSFDNIIAIDAEPVPSSMSAANDINKIVRPEYADLK 60


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 137 NAQVSMPPGLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGR 265
           N   S PP      S++    +  P+P RYS   +  +G+GGR
Sbjct: 298 NYNASRPPSNHPHSSNYPSSSRRKPSPDRYSN--YSSRGSGGR 338


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 264 GKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYG 419
           GK  G   + D  +          F   RG     +Y TRV G GG  T YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,626
Number of Sequences: 5004
Number of extensions: 63840
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)