Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O12
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    28   2.2  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   3.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   5.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   8.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.8  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   8.8  

>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 680 LTFALSRTLKNSH*AYRLRIQIWRAIASTKIW 775
           +T +LS+ +K    A R ++ +W   ++TKIW
Sbjct: 248 VTRSLSKNIKGDGDAVRAQLWLWNRQSNTKIW 279


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 743 FEYAICMLSASFLTFSITQKLT 678
           F    C++S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 703 VKKLALSIQIAYSNLARNRFDKNLGLSFNSFN 798
           VK   LS+ +AY  L++N  ++ L  S N+F+
Sbjct: 459 VKDTLLSLDMAYKALSQNNLNEALSYSNNAFS 490


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 650 VNIITLYKFKLTFALSRTLKNSH*AYRLRIQIWRAIASTKIWG 778
           +N  +LYK  ++F LS  + N    YR   Q W  +   + +G
Sbjct: 244 LNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLYEFRRFG 286


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -2

Query: 410  AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 234
            A+   + ++ +R +    L +   +A  L  +  L++ N  +       F+LD      +
Sbjct: 828  AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885

Query: 233  CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCMSIVSFELQVTE 54
                 T    R         + + P + N L  EPT+  +  ++  FC +++S   ++ E
Sbjct: 886  AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 614 EYTLTFMLSGTLKNSH*STQFCFEEIESKVYLKFTVEFSS 495
           +YTL  +  GT K +     +C   +    Y+   ++F+S
Sbjct: 150 QYTLQVLPEGTAKINPLHENYCLNSLRKDQYVDLAIQFNS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,738
Number of Sequences: 5004
Number of extensions: 58190
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)