Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O10
         (1042 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    43   4e-04
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    43   4e-04
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    43   4e-04
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    43   4e-04
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        43   4e-04
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        43   4e-04
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        43   4e-04
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        43   4e-04
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...    43   4e-04
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    43   4e-04
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    43   4e-04
J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein ( C.ele...    43   4e-04
J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein ( C.ele...    43   4e-04
J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein ( C.ele...    43   4e-04
J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein ( C.ele...    43   4e-04

>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 44  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 78



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 7   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 41


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 19/35 (54%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  LDNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 1   MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 35


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 31  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 65


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene IV, 5' end. ).
          Length = 86

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene III, 5' end. ).
          Length = 86

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene II, 5' end. ).
          Length = 83

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


>J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene I, 5' end. ).
          Length = 86

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 264 MVGKGQKDSEEGDQXQXKXXVRTPKXPIXXGIITN 368
           MVG GQKDS  GD+ Q K  + T K PI  GI+TN
Sbjct: 45  MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = +2

Query: 152 AXXLDNGPXMXKXGXXGEDAPRXGXPXIKGSPRXQ 256
           A  +DNG  M K G  G+DAPR   P I G PR Q
Sbjct: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.137    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,732
Number of Sequences: 27780
Number of extensions: 179119
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2762030832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)