Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O08
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...   100   3e-22
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   3.7  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.6  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   8.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.6  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score =  100 bits (239), Expect = 3e-22
 Identities = 75/209 (35%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
 Frame = +3

Query: 312 VTPFGRP-SDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHVLATT 488
           +TP+G P S + I           LARHG  H   P++V  RANI ALK +G   +++ +
Sbjct: 33  ITPWGYPASPISIARTTSGFLIAFLARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFS 92

Query: 489 ATGSLVEEYRPGDLVILDDFIDRT-WGRKCTFYDNTEGGPRGVCHLPMQPAYCGRARAAL 665
           A GSL E+  P D V+    IDRT   R  TF+   E G   V H+     +       L
Sbjct: 93  AVGSLREDIPPEDFVLPTQIIDRTLCARPNTFF---ESG--CVAHVSFGDPFDQDLYEIL 147

Query: 666 YSAXKS--XGYSCH-----ETGTAVVIQGPRFSSRAESLVHRQWGWPSW*T*QLSLKVVL 824
            S   +   G   H     +  T V ++GP FS+RAES ++R WG  S     +  +  L
Sbjct: 148 SSCGSNLKNGSKLHTKRKGDDLTVVCMEGPAFSTRAESNLYRSWG-ASIINMSVIPEAKL 206

Query: 825 AKEAGLSYAAVALXTDYDCWXENEKSVSV 911
           A+EA ++Y  V + TDYDCW  NE+ V+V
Sbjct: 207 AREAEIAYQMVCMATDYDCWRMNEEPVTV 235


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 498 SLVEEYRPGDLVILDDF 548
           ++V  YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 400 NINFNLAM*TIELIFGH*SKSAALTYSPRPPPGL*LKNTGLEIWSYWTISLI 555
           N++F +++   +L+F    +    T           KN  + IW+YW ++LI
Sbjct: 550 NVDFEVSVLASQLVFFVKHRDFKRTLITMKAISKLQKNFDVRIWNYWLVALI 601


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 260 TSDNSDLYFSYIAHIDGTIQHYTHRY 183
           TS  S +Y  Y  H+D  IQ+Y   +
Sbjct: 226 TSSTSMVYLLYSVHVDKIIQYYVDSF 251


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 288  ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 458
            +++++ E+  P        ++ Q+        A H R   LQPS  + +   WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 618 GTRRADPPPCCRKTCTSDPKSYQ*NRPI 535
           G   ++ PP CRKTC+S+ K Y    P+
Sbjct: 81  GHDNSNSPPKCRKTCSSN-KVYSNEVPL 107


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 288  ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 458
            +++++ E+  P        ++ Q+        A H R   LQPS  + +   WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,691,731
Number of Sequences: 5004
Number of extensions: 76777
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)