Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_O05
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   314   6e-86
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    31   0.85 
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    31   0.85 
U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    30   2.0  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    30   2.0  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    30   2.0  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    30   2.0  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    30   2.0  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    30   2.0  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    29   6.0  
AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  314 bits (771), Expect = 6e-86
 Identities = 157/195 (80%), Positives = 170/195 (87%), Gaps = 7/195 (3%)
 Frame = +1

Query: 70  KSFEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFV 249
           K  EVGDTPKDRALFNGAQKLFGMVITVGQAIVYVM+G+YGEPSEIGAG+CLLI++QL +
Sbjct: 98  KIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMSGLYGEPSEIGAGICLLIVVQLVI 157

Query: 250 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALF 429
           AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPAT+NTGRGTEFEGAVIALF
Sbjct: 158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATMNTGRGTEFEGAVIALF 217

Query: 430 HLLATRPDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQG----LP---CRFAHQVC 588
           HLLATR DKVRALREAFYRQNLPNLMNL+AT LVFA+VIYFQG    LP    R+  Q  
Sbjct: 218 HLLATRSDKVRALREAFYRQNLPNLMNLMATFLVFAVVIYFQGFRVDLPIKSARYRGQYS 277

Query: 589 SLSWTVFFIPNQTIL 633
           S    +F+  N  I+
Sbjct: 278 SYPIKLFYTSNIPII 292



 Score =  139 bits (337), Expect = 2e-33
 Identities = 69/86 (80%), Positives = 71/86 (82%)
 Frame = +2

Query: 560 FRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFXGNFLXNV 739
           FRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA KF GNF  N+
Sbjct: 261 FRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAGKFGGNFFINL 320

Query: 740 LGVWADXGGGXPAXXAPVGGLCYYLS 817
           LG W+D  G       P GGLCYYLS
Sbjct: 321 LGTWSDNTG---YRSYPTGGLCYYLS 343


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 534 CYSDILPGXSV*ICPSSLLVIVDSILHTQSNYSTLLIYPSFCSLLLSPIFM 686
           C++DI     + ICP+SL V ++S+ +       + + P F  L ++ I +
Sbjct: 179 CFNDITKEQVIEICPTSLFVTINSVYNIYMYMVLMTLLPFFFLLCINAIIV 229


>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +3

Query: 504 DESTSHCSCLCYSDILPGXSV*IC-----PSSLLVIVDSI 608
           D   + CS L YSD LP  S+ +C     PS L+ +V+SI
Sbjct: 143 DSRNARCSSLTYSDSLPAASIVVCYFNESPSVLIRMVNSI 182


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +3

Query: 504 DESTSHCSCLCYSDILPGXSV*IC-----PSSLLVIVDSI 608
           D   + CS L YSD LP  S+ +C     PS L+ +V+SI
Sbjct: 143 DSRNARCSSLTYSDSLPAASIVVCYFNESPSVLIRMVNSI 182


>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 609 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 652


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 330 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 199
           +NK +DT  + + FLE+ +++    T   + + +++   G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 404 NSVPRPVLTVAGENAFHTMVSQMFVAINREIPEPNPYPFWSNSSSNNTIRPATNSCMIMR 225
           N+  R  L+V+   + H  +     +  R IP P+  P   +SSS+ TI    +S +   
Sbjct: 43  NTSARSRLSVSSAQSPHCFLPTTRDSSPRSIPSPSLVPMRPDSSSDITINELHHSPLSHT 102

Query: 224 RHTPAPISL 198
             TP P  +
Sbjct: 103 GSTPEPTEI 111


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 273 EQQHNKTGHKQLYDNEEAHSGTNFTGFAIHSSHYINNSLTNSN 145
           +QQH K G+ + ++N + +  + +  FA  S +  NN+   SN
Sbjct: 54  QQQHFKMGYSENFENFDENGSSGYNNFA-DSGNGFNNNGAESN 95


>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 246 KQLYD--NEEAHSGTNFTGFAIHSSHYINN 163
           K +Y+   +EAH+ TNF    I  SHY NN
Sbjct: 679 KDIYELTRDEAHAQTNFMNSIILFSHYGNN 708


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 434 RWNNAITAPSNSVPRPVLTVAGENAFHTMVSQMFVAINREIPEPNP 297
           +WN+A    +  VP P L+ A E  F+T +++ +      +P  NP
Sbjct: 183 KWNHARLRVAQEVPVPDLSQASEEEFYTNLAKEW-KCQATLPNTNP 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,742,207
Number of Sequences: 27780
Number of extensions: 459206
Number of successful extensions: 1303
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)